AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01005 | ATGGCGATTGCAGCCCAAACTCCTGATATTCTAGGAGATCGCCAGTCCGGTCAGGACGTCCGGACCCAAAATGTCGTAGCTTGTCAAGCGGTTGCGAACATCGTGAAGTCGTCGCTCGGACCGGTTGGACTGGACAAGATGCTAGTTGATGATATTGGTGATGTAACAATCACTAATGACGGTGCTACAATTCTCAAGATGTTAGAAGTAGAGCATCCAGCGGCTAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATCGAGAAGTTGGAGATGGGACGACTTCTGTCGTCATTGTAGCTGCAGAGTTGCTTAAGAGAGCAAATGAGCTTGTGAGAAATAAGATTCACCCAACATCTATAATCAGTGGATATAGACTTGCTATGAGGGAAGCGTGCAAATATGTTGATGAGAAACTGGCTGTGAAGGTTGAAAAGCTTGGGAAGGATTCACTTGTAAACTGTGCTAAGACAAGCATGTCCTCAAAACTCATCGCTGGTGACAGTGACTTCTTTGCAAATTTGGTTGTAGAAGCAGTCCAAGCGATAAAAACAACCAATGCACGGGGGGAGATTAAATACCCAATCAAGGGCATTAATATTCTGAAAGCTCATGGAAAAAGTGCAAAGGAAAGCTACTTGCTGAATGGTTATGCTCTGAATACCGGCCGTGCTGCACAAGGAATGCCCACTAGAGTTGCCCCTGCAAGGATTGCCTGCCTGGATTTCAATCTTCAGAAGACAAAAATGCAAATGGGTGTCCAAGTTTTAGTCACTGATCCTAGGGAACTTGAAAAAATTCGACAAAGAGAGGCTGATATGACGAAAGAGCGTATTGAAAAGCTTCTGAAAGCAGGGGCCAATGTTGTTCTGACCACCAAAGGAATTGATGACATGGCACTCAAGTACTTTGTAGAGGCTAGGGCAATTGCTGTGAGATGTGTTCGTAAAGAAGATTTGCGCCATGTTGCCAAGGCGACCGGTGCGACTGCGGTTTCAACATTTGCTGATATGGAAGGAGAGGAAACATTTGATTCGTCACTTCTTGGATACGCAGATGAAGTTGTGGAGGAGCGCATTGCTGATGATGATGTGATTATGATAAAAGGGACCAAAACTTCGAGTGCGGTGTCATTGATCCTCAGAGGTGCAAATGACTACATGCTTGATGAGATGGAAAGAGCTTTGCATGATGCTTTATGCATTGTCAAGAGGACCCTTGAGTCCAATGTGGTAGTTGCTGGTGGAGGTGCCGTTGAGGCTGCTTTATCCGTGTACTTGGAGTATCTCGCAACAACTTTGGGATCCCGAGAACAGTTGGCAATAGCGGAGTTTGCCGAATCACTTTTAATTATACCAAAGGTTCTTGCTGTGAATGCCGCAAAGGATGCGACTGAATTGGTTGCGAAACTTCGGGCTTACCACCATACTGCACAAACCAAGGCAGATAAGCAGCATCTTTCAAGCATGGGACTAGACCTTCAAAAGGGAATTGTCCGCAACAATTTAGAAGCTGGGGTTATAGAGCCAGCAATGAGCAAGGTGAAGATAATACAGTTTGCAACTGAAGCAGCTATAACTATTCTTCGTATCGATGACATGATCAAGCTCGTCAAAGATGATCGCGATAATGAAGAGTAG | 1638 | 45.12 | MAIAAQTPDILGDRQSGQDVRTQNVVACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANELVRNKIHPTSIISGYRLAMREACKYVDEKLAVKVEKLGKDSLVNCAKTSMSSKLIAGDSDFFANLVVEAVQAIKTTNARGEIKYPIKGINILKAHGKSAKESYLLNGYALNTGRAAQGMPTRVAPARIACLDFNLQKTKMQMGVQVLVTDPRELEKIRQREADMTKERIEKLLKAGANVVLTTKGIDDMALKYFVEARAIAVRCVRKEDLRHVAKATGATAVSTFADMEGEETFDSSLLGYADEVVEERIADDDVIMIKGTKTSSAVSLILRGANDYMLDEMERALHDALCIVKRTLESNVVVAGGGAVEAALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDATELVAKLRAYHHTAQTKADKQHLSSMGLDLQKGIVRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDDRDNEE | 545 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01005 | 545 | PANTHER | CHAPERONIN | 13 | 536 | IPR017998 | GO:0005832(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)|GO:0140662(InterPro) | |
| Eupl14g01005 | 545 | NCBIfam | T-complex protein 1 subunit alpha | 10 | 542 | IPR012715 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro) | |
| Eupl14g01005 | 545 | NCBIfam | thermosome subunit alpha | 13 | 534 | IPR054827 | - | |
| Eupl14g01005 | 545 | Gene3D | - | 140 | 409 | IPR027410 | - | |
| Eupl14g01005 | 545 | FunFam | Uncharacterized protein | 28 | 140 | - | - | |
| Eupl14g01005 | 545 | SUPERFAMILY | GroEL equatorial domain-like | 13 | 535 | IPR027413 | - | |
| Eupl14g01005 | 545 | ProSitePatterns | Chaperonins TCP-1 signature 3. | 85 | 93 | IPR002194 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro) | |
| Eupl14g01005 | 545 | SUPERFAMILY | GroEL apical domain-like | 210 | 382 | IPR027409 | - | |
| Eupl14g01005 | 545 | ProSitePatterns | Chaperonins TCP-1 signature 1. | 36 | 48 | IPR002194 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro) | |
| Eupl14g01005 | 545 | FunFam | T-complex protein 1 subunit alpha | 215 | 373 | - | - | |
| Eupl14g01005 | 545 | Pfam | TCP-1-cpn60 chaperonin family | 31 | 536 | IPR002423 | GO:0005524(InterPro) | |
| Eupl14g01005 | 545 | ProSitePatterns | Chaperonins TCP-1 signature 2. | 57 | 73 | IPR002194 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro) | |
| Eupl14g01005 | 545 | NCBIfam | thermosome subunit beta | 13 | 534 | IPR053374 | - | |
| Eupl14g01005 | 545 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 33 | 49 | IPR017998 | GO:0140662(InterPro) | |
| Eupl14g01005 | 545 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 85 | 104 | IPR017998 | GO:0140662(InterPro) | |
| Eupl14g01005 | 545 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 411 | 423 | IPR017998 | GO:0140662(InterPro) | |
| Eupl14g01005 | 545 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 55 | 73 | IPR017998 | GO:0140662(InterPro) | |
| Eupl14g01005 | 545 | PRINTS | Tailless complex polypeptide 1 (chaperone) signature | 377 | 399 | IPR017998 | GO:0140662(InterPro) | |
| Eupl14g01005 | 545 | Gene3D | GroEL | 215 | 373 | IPR027409 | - | |
| Eupl14g01005 | 545 | SUPERFAMILY | GroEL-intermediate domain like | 147 | 409 | IPR027410 | - | |
| Eupl14g01005 | 545 | CDD | TCP1-alpha | 12 | 538 | IPR012715 | GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro) | |
| Eupl14g01005 | 545 | Gene3D | - | 28 | 535 | IPR027413 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01005 | K09493 | T-complex protein 1 subunit alpha |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr13:10125654 | Eupl14g01005 | Eupl-Chr14:15777371 | dispersed | |
| Eupl | Eupl-Chr14:15277087 | Eupl14g01005 | Eupl-Chr14:15777371 | dispersed | |
| Eupl | Eupl-Chr14:15777371 | Eupl3g02334 | Eupl-Chr3:54593486 | dispersed | |
| Eupl | Eupl-Chr14:15777371 | Eupl3g02272 | Eupl-Chr3:53620412 | transposed |