AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01008 ATGTTTCCGTATTTCAGTTATTTCCCCCTCCTCATTCTCCTCTTGATTCCCCGCCCTTGCTTGCCCGCCAGAACCACACCCGCTAAAGAGATTATAACCGTTTTACCTGTCAACGGTAATAACGGAACCTGGCGCGAATTCGAGAGATTCCTGGATGCCGGGAGGGGCAACCATGTCAGTGGCATGTCGGAGCTCAAGAAGTACTTCCACCGATTTGGTTATCTCCCAGTACCCAATACGAATTTTACCGATACGTTCGACGAGCGATTTGAATCGGCCGTTGTTCAATACCAATCGAAACTTGGATTACCCGTCACGGGCACGCTTGACTCCGGCACGCTATCGCAGATTATGACGCCACGGTGCGGTGTTGGCGACACGGAGAATATGTTACATACGACAAAGCACTTCGCGTACTTTCCCGGCCAGCCGAGATGGGCTCGTCCGACTCCGATAAACCTTAGTTATGCATTTTTACCCGAGAATTCGATTGGGTATTTGAGCTCGTCAGATATCAGGGCCATCTTTCAACGGGCTTTTGTGAAGTGGGCATCCGTTATACCAGTGAGTTTCTTCGAGACGGAAGATTACTCGAACGCTGATGTCAAGATTGGGTTCTACAGTGGGGATCACGGCGATGGAGAGCCGTTTGATGGGGTGCTTGGAGTGCTCGCCCACGCTTTCTCACCAGAGAGCGGGAGATTCCACCTTGACGCAGCGGAGACTTGGGCCGTTGACTTCGGATCAGATAAATCAAAAGTAGCCGTTGATTTGGAATCGGTAGCAACCCATGAAATCGGACACGTACTTGGTCTGGCCCACTCAACGGTTAAAGAAGCGGTTATGTACCCTAGTTTGAGGCCTAGGACGAAGAAGGTAGACTTGAAATTGGATGACGTGGAGGGGGTGCAAGCTCTTTACGGGTCAAACCCGAATTTCAAATTCAGTTCCTTATTGGAGTCTGATACTTCCTCAAATCAAGCCGTTGGTTCAAGACTCAAAAGATCTAAGTGGGCCACTTCACTAAACTTGTCGGAAGTCGGGTCCAATCTGCCCCATTTCAAGCCCTATAATGATGAGGGGAACACTGACAGCAAAGGTGGTGGTCGTGATACGAGAAACTCAATTGAAATAGATGTCGTCGCACCGGGAGTTCAAGAACTACTAAAACCAATGGAGGAGCTCAGGCGAGAGATGGCAGAACAAAAGAAAGAGAATGAATCTCTTCGATTGCTGCTAGAAAAGAGGAATCTCATCAACATCCCTGAGAGGGAGAATGCTGAATCAACTCAGCATGTACCTTGTCAAGAGAATCTTGGAGCACTTCCCTAG 1332 49.02 MFPYFSYFPLLILLLIPRPCLPARTTPAKEIITVLPVNGNNGTWREFERFLDAGRGNHVSGMSELKKYFHRFGYLPVPNTNFTDTFDERFESAVVQYQSKLGLPVTGTLDSGTLSQIMTPRCGVGDTENMLHTTKHFAYFPGQPRWARPTPINLSYAFLPENSIGYLSSSDIRAIFQRAFVKWASVIPVSFFETEDYSNADVKIGFYSGDHGDGEPFDGVLGVLAHAFSPESGRFHLDAAETWAVDFGSDKSKVAVDLESVATHEIGHVLGLAHSTVKEAVMYPSLRPRTKKVDLKLDDVEGVQALYGSNPNFKFSSLLESDTSSNQAVGSRLKRSKWATSLNLSEVGSNLPHFKPYNDEGNTDSKGGGRDTRNSIEIDVVAPGVQELLKPMEELRREMAEQKKENESLRLLLEKRNLINIPERENAESTQHVPCQENLGALP 443
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01008 443 PRINTS Matrixin signature 261 286 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 PRINTS Matrixin signature 200 228 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 PRINTS Matrixin signature 295 308 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 PRINTS Matrixin signature 176 191 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 Pfam Matrixin 146 308 IPR001818 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)|GO:0031012(InterPro)
Eupl14g01008 443 PANTHER MATRIX METALLOPROTEINASE 16 340 - GO:0004222(PANTHER)|GO:0030198(PANTHER)|GO:0030574(PANTHER)
Eupl14g01008 443 MobiDBLite consensus disorder prediction 349 375 - -
Eupl14g01008 443 Pfam Putative peptidoglycan binding domain 62 116 IPR002477 -
Eupl14g01008 443 CDD ZnMc-MMP 153 308 IPR033739 GO:0008237(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 SUPERFAMILY Metalloproteases (zincins), catalytic domain 138 311 - -
Eupl14g01008 443 Coils Coil 385 412 - -
Eupl14g01008 443 FunFam Metalloendoproteinase 1 52 313 - -
Eupl14g01008 443 SMART col-5 142 309 IPR006026 GO:0006508(InterPro)|GO:0008237(InterPro)|GO:0008270(InterPro)
Eupl14g01008 443 SUPERFAMILY PGBD-like 54 126 IPR036365 -
Eupl14g01008 443 Gene3D Collagenase (Catalytic Domain) 54 314 IPR024079 GO:0008237(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01008 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:7637196 Eupl14g01008 Eupl-Chr14:15860891 dispersed
Eupl Eupl-Chr14:15860891 Eupl4g01685 Eupl-Chr4:31580372 dispersed
Eupl Eupl-Chr14:15860891 Eupl12g00285 Eupl-Chr12:11465261 transposed