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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01020 ATGTTAACATCAGTCGTAGCGAGACCTCCGTCTACAGACGTAAAGTTGGCGGCGATCGCTGTGGGTCTAAACGTACGGTTGAGATCAGCCGATATGCCGGCAGACATGCAAGAGCGAGCCTTCAGACACACCAGAGAACTTATAGACACAGCAGCCAACAACCGACCCAACTCCACCCAGATAGCTCTCGCCCTCAAGAAGGAATTCGATGCGTCGTACGGTCCAGCGTGGCACTGCATAGTAGGGAAGAGTTTCGGATCGTTCGTGACTCACTCGCCGGGAGGATTCCTGTACTTCTCCGTCGACAAGCTCTTTCTTCTTCTTTTCAAAACGGAGGTCCAACCAGTGATCGAGTCTCCTCCTTGA 366 52.73 MLTSVVARPPSTDVKLAAIAVGLNVRLRSADMPADMQERAFRHTRELIDTAANNRPNSTQIALALKKEFDASYGPAWHCIVGKSFGSFVTHSPGGFLYFSVDKLFLLLFKTEVQPVIESPP 121
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01020 121 CDD DLC-like-DYNLL1-DYNLL2 24 111 - -
Eupl14g01020 121 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 21 111 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Eupl14g01020 121 FunFam Dynein light chain 15 112 - -
Eupl14g01020 121 SUPERFAMILY DLC 23 111 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Eupl14g01020 121 SMART Dynein-light-2 20 111 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Eupl14g01020 121 PANTHER DYNEIN LIGHT CHAIN 24 112 IPR001372 GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER)
Eupl14g01020 121 Pfam Dynein light chain type 1 25 111 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01020 K10418 dynein light chain LC8-type
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:24118736 Eupl14g01020 Eupl-Chr14:16693454 dispersed
Eupl Eupl-Chr11:8129618 Eupl14g01020 Eupl-Chr14:16693454 dispersed
Eupl Eupl-Chr14:16693454 Eupl6g00931 Eupl-Chr6:15037577 dispersed
Eupl Eupl-Chr14:16693454 Eupl4g00881 Eupl-Chr4:13561294 transposed