AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01029 ATGTCGAAGGAATCGTTTCAACCTCGAGCGGTTGGAGATGGCGACCGTACTAATTTCGCTCGGACATTCAAATATCTCATGGCTACTCAGTTTTTGTCGAGGGGAATTCCCTTCATTTTCAATTCGTGGATCGTTAGACACCTTACTGAAGAGGACTATGCGATTTTTGCAGTGCAATTTCATCTTTTCGTCACATGTATCTTGTTTCTTAGTCGGGAAGGATTTCGGCGAGCATGCTTGCGGACTGACGTCAGATGTGATGGTGCATCAATGGAAGAAAATGCCGTAAAATTACTGAAAGTAGCCTGGATGACTTTCCCAATTGGAATATTGATTACATTTGTTGCATGCATCTTTGTCTTCTGGTGGCAAGCTCTAAACATATCTAGTCCATACGCGCAAGCTATCTTAATCCATGGATTTGCATGTATATTGGAGCTATTGGCAGAACCTTTGTACATTCTTTCTCAGAACTTGCTTCTCCTTGAATTGCGATTGATGGTTGAAACTGCGGCTACACTTTTACGTTGCACGACTACATACATTCTCATTGTCAAGCAAACTAATATGGAAAAAGCGATTGTATTTGCATTATCACAGACAGCTTATGGTGCTTGCTTGTTCTTAGGCTATTGGGGCTACTTTCTTCTCTTTCACATGGTTAGAAATTCCGACCTTTTCCCTTTCAGAATAGGAAATTTGATGGATTATGATAGGCAGCTTTCACATATGTGCATGTTGTTCACCCGCCAATCCTTCCGGAAATTGGTCCTTCAAGAAGGAGAAAAGATGGTTCTAGTATGGTTAGACACTCCATATAACCAAGCTGTATATGGACTTGTAGACAAATTAGGTAGTTTAGTTGTGAGATTGGTGTTTCTTCCTTTCGAAGAAAGTTCCTATGCAACATTTGCAAGGTTTGCATCAGGACAATACCCTAATAGAAACATGAAGTTAGGGAGTTCCCTCACAGAGGCCCTAAAGCTTGTTCTGTTGATTGGTCTTGTGGTCATGGCATTTGGCCCGAGCTACTCTTATGCTCTTATTAGAGTGTTGTATGGTAGGAAATGGAGTGATGGAGAAGCCCCCACTGCCCTCCGTTATTATTGCCTTTATGTCATTGTTTTGGCTATGAATGGAACATCTGAAGCATTTCTACATGCAGTGGCGTCCGAGAACCAACTCAAGCATTCAAATGATTCCTTGCTCATATTCTCTGGGATATACATAGTATTGAATGTCCTGCTGATTCGATCAGCCGGTGCAATTGGGTTAATTGCTGCTAATTCATTAAATATGCTTTTGAGGATTATTTACTCTGCAGTATTCATCAAGCGGTATTTTCAGGGTTCTCCCTTTTTTGCTTTCCACCGTTGCTTGCCTTCAGGTTGGATAGTTTTGCTTCTTTCTAGTGTCACCACACTCATTTCCGAGAGAATATTCTTAGATCGGGAAAACTTCTGGCCAACCATGTTCATTCACTTCTCCATTGGCTTAGCATGCTTCTGCATATCCTCCATTGTAATATATCGCCGCGAGAGGCTTTATATTAATAAAATCATTCGTTTTCGTGACCACATCGAGTGA 1587 41.27 MSKESFQPRAVGDGDRTNFARTFKYLMATQFLSRGIPFIFNSWIVRHLTEEDYAIFAVQFHLFVTCILFLSREGFRRACLRTDVRCDGASMEENAVKLLKVAWMTFPIGILITFVACIFVFWWQALNISSPYAQAILIHGFACILELLAEPLYILSQNLLLLELRLMVETAATLLRCTTTYILIVKQTNMEKAIVFALSQTAYGACLFLGYWGYFLLFHMVRNSDLFPFRIGNLMDYDRQLSHMCMLFTRQSFRKLVLQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYATFARFASGQYPNRNMKLGSSLTEALKLVLLIGLVVMAFGPSYSYALIRVLYGRKWSDGEAPTALRYYCLYVIVLAMNGTSEAFLHAVASENQLKHSNDSLLIFSGIYIVLNVLLIRSAGAIGLIAANSLNMLLRIIYSAVFIKRYFQGSPFFAFHRCLPSGWIVLLLSSVTTLISERIFLDRENFWPTMFIHFSIGLACFCISSIVIYRRERLYINKIIRFRDHIE 528
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01029 528 Pfam Rft protein 21 521 IPR007594 GO:0006488(InterPro)|GO:0016020(InterPro)
Eupl14g01029 528 CDD MATE-rft1 18 450 - -
Eupl14g01029 528 PANTHER ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED 17 524 IPR007594 GO:0005789(PANTHER)|GO:0006488(InterPro)|GO:0016020(InterPro)|GO:0034203(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01029 K06316 oligosaccharide translocation protein RFT1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:17000079 Eupl14g01350 Eupl-Chr14:31498695 wgd