AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01037 ATGGTTAGACAAAGAGACCCATTTTGGGAGTATGGTGAGGACTTGAAGGGGCGCTTTCGTTGCAACTTTTGTAAAAAAGACTATCCAGGAGGTGTAGCACGTTTGAAATCCCATTTGTCACGTAAACAAGGGCGGGATGTGGCGGTTTATCCTACAGTGTCGGATGATGTTCAAGCTGCTGCCCTTTGTGCTATTATGGAAAATGACATTTCTAATAAGAGAAGTAAGACGGAATCGTCTTGTACAATGGGAGGTGGAGTCAGTTCATCTATTAACTCAAGTAAGTCACTTCAGGGATCTACTTTACGCCAAGCTACTTTACCACCATTGTGTAACAAGAAGAAAAAAGTTTTGGTAGACAAATCCGTTTCCAATTTCTTCTATATGAATAACATTTCATTTAATGTTATTAAGTCACCATCTTTTATGGAAATGATTAATTCTATTGGTGAGTTTGGAGTTGGTTATACCTTGCCAAGTTATTCAACTCTTCGCTCAAAGTTGGTGACGGATGGTAGAGAAGATGTGGATGAGTACGTTTCTACAGTTAAGAAGACTTGGGGCGACACGGGCTGCACATTAATGTCAGACATCTGGACTGATATGAAGAGTCGGTCTGTTATTAATGTGGTTGCTTATTCACCAAAGGGAGCTGCCTTTTTGAGATCATTCGATAGGTCTGGTGAAAGAAAAATGGGTTTACTTCTTAGAGATGTTCTCTCTACGGTCATTGATGAAATTGGGCCAGAGTATGTGGTGCAGCTTGTAACTGACAATGCTTCAAATTATGAAAATGCTGATGATTTGATTATGGAAAGGTATCCTCATATCTACAAAACAAAATGTGCAGCCCATGGAGTCCAATTGCTTTTGAAAGATATTTATGAGGATGTTGAGTGGATAAGAAGTATTTTTGATGATGCAAAGATGATAGTTGATTACATGTATAAACACGCTGTGGTTTTAGCATTATTGAGGAAGCACACTGATGGAAAGGAATTAAGGAGGCACTGTAAGACCAGATTTGCTTCACACTTTATAATGCTTCAATCTGTTCTCAAAGTTGAAGATGAGTTAAGATTACTGGTTGCATCCCCTGAATGGAGAGGCCTAAATTATAGTAATAGATTGCCAGCAACAGAGGTGACTGAAAAAATTCAAAGTATATCCTTTTGGAAGGAGGGAAGTGAGGTGATATCAACTTTGGAGCCTCTTGTTAGAGTGTTACGTTTGGTTGATGGTGAGGGGTCAACCGCGGGGTATTTATACGAGGTGATGGAAAGGGCAAGGACAACACTCAAGCATCGACATGTTAGTGAACCATCAAAGTACACGAAAATTTTGTCACTATTTAACTCAAGAAGGGATGTGAACATAATTCACAAGGTTCATGCAGTTGCTGCTTATCTTAACCCACCTTTAATGTATGATGGGAAGATCAGATATGGAAATCCTGAAGTCAAAGAAGGTCTTTTATATATAACGGATAAATACTTCGAATCTACGGAGGAAAATAATGCATTTGGTGCTCAATTGATGACTTACAATGCCAAAAGTTCAGATCTCTTTAACAAGCTTTCTGTACCTCAGATGAGAACTTTTCATCCTCGGATATGGTGGGAAGCCAATGGTGATAGTATTCCTTTAGTACAAAAGGTTGCTATCCGTATTTTGAGTCAACCATGCAGTTCTTCGACATGTGAACGAAATTGGAGTGCATTTGAAGCAGTACAAACAAAGAAGAGGAACAAATTATCATCAGAGATGTTGGAGAACTTGGTTTACATATGTATGAATACAAAGATGATGGTCAATGCTGATGATCTTGAGAAAAGAGATAAGAAACCAATTGATCTTGAGAAGCTTGGAGAATTTTCTGAAGACAATGATGATGATCTTACGGAGTTTGATAGTGATGAAGATTATAATCAGGATACAAATCATGATAGTGCATGGCTTGACAACCTTGTGCTTGGCAATGAGTTCATTTCTTCATAA 1998 38.49 MVRQRDPFWEYGEDLKGRFRCNFCKKDYPGGVARLKSHLSRKQGRDVAVYPTVSDDVQAAALCAIMENDISNKRSKTESSCTMGGGVSSSINSSKSLQGSTLRQATLPPLCNKKKKVLVDKSVSNFFYMNNISFNVIKSPSFMEMINSIGEFGVGYTLPSYSTLRSKLVTDGREDVDEYVSTVKKTWGDTGCTLMSDIWTDMKSRSVINVVAYSPKGAAFLRSFDRSGERKMGLLLRDVLSTVIDEIGPEYVVQLVTDNASNYENADDLIMERYPHIYKTKCAAHGVQLLLKDIYEDVEWIRSIFDDAKMIVDYMYKHAVVLALLRKHTDGKELRRHCKTRFASHFIMLQSVLKVEDELRLLVASPEWRGLNYSNRLPATEVTEKIQSISFWKEGSEVISTLEPLVRVLRLVDGEGSTAGYLYEVMERARTTLKHRHVSEPSKYTKILSLFNSRRDVNIIHKVHAVAAYLNPPLMYDGKIRYGNPEVKEGLLYITDKYFESTEENNAFGAQLMTYNAKSSDLFNKLSVPQMRTFHPRIWWEANGDSIPLVQKVAIRILSQPCSSSTCERNWSAFEAVQTKKRNKLSSEMLENLVYICMNTKMMVNADDLEKRDKKPIDLEKLGEFSEDNDDDLTEFDSDEDYNQDTNHDSAWLDNLVLGNEFISS 665
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01037 665 ProSiteProfiles Zinc finger BED-type profile. 3 57 IPR003656 GO:0003677(InterPro)
Eupl14g01037 665 MobiDBLite consensus disorder prediction 628 647 - -
Eupl14g01037 665 Pfam hAT family C-terminal dimerisation region 530 596 IPR008906 GO:0046983(InterPro)
Eupl14g01037 665 Pfam Protein of unknown function (DUF 659) 159 311 IPR007021 -
Eupl14g01037 665 SUPERFAMILY Ribonuclease H-like 189 601 IPR012337 -
Eupl14g01037 665 PANTHER OSJNBA0013A04.12 PROTEIN 2 642 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01037 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:12948477 Eupl14g01037 Eupl-Chr14:17194204 dispersed
Eupl Eupl-Chr11:35174637 Eupl14g01037 Eupl-Chr14:17194204 dispersed
Eupl Eupl-Chr12:4452039 Eupl14g01037 Eupl-Chr14:17194204 dispersed
Eupl Eupl-Chr13:24947216 Eupl14g01037 Eupl-Chr14:17194204 dispersed
Eupl Eupl-Chr14:17194204 Eupl1g00234 Eupl-Chr1:7405154 dispersed
Eupl Eupl-Chr14:17194204 Eupl12g00227 Eupl-Chr12:7960387 transposed