AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01040 ATGTTACCCGTTCAAATGGGTCTTGGGAAGACTTTGCAAGCTATATCTTTCTTGAGCTATTTGAAGTTTCATCAGTTGTCACCTGGGCCATTTTTGGTACTATGTCCTCTAAGTGTCACAGATGGTTGGGTATCAGAGATGGCCAATTTTTGTCCAAAATTGAGGGTTCTTAGATATGTAGGTGACAAAGAACTACGATGCGGTTTACGCAGGACAGTATATGAGCATATAAAGAAACAGTCATCATCATCTAATGTACAATCGACTTTACCTTTTGATGTCCTGTTGACGACGTATGACATAATATTGATGGATCAAGATTTTCTAGCTCAAATTCCATGGCACTATGCTGTAATTGATGAAGCTCAGCGACTTAAAAATCCTTCCAGTGTTTTGTACAATGTACTTGAACATCAGTTTGCCATGCCGAGACGGTTATTGATGACAGGCACCCCCATACAAAATAACCTTTCTGAACTCTGGGCTTTGATGCATTTTTGTATGCCTACAGTCTTTGGGACATCGGAGCAGTTTCTTTCCACTTTCAAGGAAGCTGGAGATCCTTCAGCAGATCACGATGCAGCAAAAGTGAAGGAACAATTCAAAAATTTGAAATATATATTGGGAGCATTTATGCTTCGGCGAACAAAATCCATGCTTATTGAGAATGGAACTCTTATGCTGCCACCTCTTACAGAGATTACTGTGATGGCACCGCTGGTAACCCTGCAAAAGAAGGTCTATATGTCAATATTGAGGAGGGAGCTTTCTAAACTTCTCGCATTCTCTTCTAGAGCTTCTAACCAGCAGTCCTTACAGAATATTGTAATACAGTTGCGGAAAGCATGCAGTCATCCTTACCTCTTCCCTGGTATTGAGCCTGAACCATATGAAGAGGGTGAACACCTAGTTCAGGCTAGCGGTAAACTTATTGTTTTGGACCAACTTCTTCAGAAGCTACATACCACTGGACACCGTGTTCTGCTGTTTGCTCAGATGACTCATACACTTGATATTCTTCAGGACTTTATGGAGTTAAGGAAGTATACCTACGAACGTCTTGATGGATCTGTTCGTGCTGAGGAGCGGTTTGCTGCAATAAGAAGTTTCAGCCAACAACCATTAAAAAGCATTTTGAATTCCCAAGCTGAACAACATGGTGCCTTTGTCTTTATGATCTCAACTAGAGCAGGGGGAGTTGGCCTAAATCTTGTTGCTGCTGATACTGTTATATTTTATGAGCAAGATTGGAATCCCCAGGTGGACAAGCAGGCCCTGCAGCGTGTGCACCGAATTGGTCAGATGAACCATGTATTGTCTATAAACCTAGTAACAGGAGACACAGTGGAGGAGGTAATCATGCGGAGAGCAGAGAGAAAATTACAGCTCAGCCATAATGTGGTAGGGGTGCATGAGATGGACCAGGAAGGAAAAGAAATGGGAGCTGACACTGGTGACTTGCGATCTGTCATATATGGGTTGCATATGTTTGATCCTACAGACATCAATAATGAAAATTTCAGTGAAGTGAATATGATGGAATTGAATGCTCTGGCTGAAAAGGTACTTGAAATGCGCCATGAACCATCAAACAATGATGATAGAAAGTTTGAGGTTAATCCAATGGATCGGTTGAAGGGAGGTGATATCTCCATGAAAAATACTTTTACTTCTATTAGTTTTGATCCTGGGCTTGATGAGGCTTCATATCTCTCCTGGGTTGAAAAGTTCAAAGAGGCATCACAATCAAATGATAAATCCACTCTGGAGTTGGGATCGAGAAGAAACTTACCTGAAGAAAAGCACCTAAAACTTGAAGCCGCAAGGAAGAAGGCCGAGGAGAAGAAGTTATCTAAGTGGGAAGCTCTTGGTTACCAATCAGTAGCTGTCGAGGACCCCATCTGCAATATGGATGGTGACATGATGTTAGATTCGGGTTCCATCCAATTTGTCTATGGAGATTGTACAAATCCATCAACAGTTTGCCCATCTGAACCTACCGTAATATTTAGTTGTGTTGATAACTCTGGAAATTGGGGGCGTGGAGGAATGTTTGATGCACTAACCAAACTTTCTGCGAGTATCCCATACATTTATCAAAGAGCTTTTGAATTTGAGGACCTTCATCTGGGTGATCTCCATTTTATAAAAATCAACGAGAACGATGTTGAAAATAATGTGGATGGAAATACTCCTCAGTGGGTGTCTTTGGCTGTTGTACAATCATATAATCCTAGACGGAAAGTTCCCCGCAGCAATATCTCTATACCTGACTTGGAGCGATGCTTATCAAAGGCGTCTTTCGCAGCTACTCAAAATTCTGCATCAATCCATATGCCACGCATCGGGTATCAAGATGCATCCCAACGTTCAGAATGGTACACAGTTGAACGTCTCTTGCGAAAATATGCATCTATATATGGCATAAAGATTTTTGTGTATTATTTCCGACGTTCATCTTGA 2463 41.49 MLPVQMGLGKTLQAISFLSYLKFHQLSPGPFLVLCPLSVTDGWVSEMANFCPKLRVLRYVGDKELRCGLRRTVYEHIKKQSSSSNVQSTLPFDVLLTTYDIILMDQDFLAQIPWHYAVIDEAQRLKNPSSVLYNVLEHQFAMPRRLLMTGTPIQNNLSELWALMHFCMPTVFGTSEQFLSTFKEAGDPSADHDAAKVKEQFKNLKYILGAFMLRRTKSMLIENGTLMLPPLTEITVMAPLVTLQKKVYMSILRRELSKLLAFSSRASNQQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLIVLDQLLQKLHTTGHRVLLFAQMTHTLDILQDFMELRKYTYERLDGSVRAEERFAAIRSFSQQPLKSILNSQAEQHGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRVHRIGQMNHVLSINLVTGDTVEEVIMRRAERKLQLSHNVVGVHEMDQEGKEMGADTGDLRSVIYGLHMFDPTDINNENFSEVNMMELNALAEKVLEMRHEPSNNDDRKFEVNPMDRLKGGDISMKNTFTSISFDPGLDEASYLSWVEKFKEASQSNDKSTLELGSRRNLPEEKHLKLEAARKKAEEKKLSKWEALGYQSVAVEDPICNMDGDMMLDSGSIQFVYGDCTNPSTVCPSEPTVIFSCVDNSGNWGRGGMFDALTKLSASIPYIYQRAFEFEDLHLGDLHFIKINENDVENNVDGNTPQWVSLAVVQSYNPRRKVPRSNISIPDLERCLSKASFAATQNSASIHMPRIGYQDASQRSEWYTVERLLRKYASIYGIKIFVYYFRRSS 820
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01040 820 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 481 IPR001650 -
Eupl14g01040 820 Pfam SNF2-related domain 5 288 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Eupl14g01040 820 Pfam Helicase conserved C-terminal domain 309 433 IPR001650 -
Eupl14g01040 820 SMART helicmild6 338 433 IPR001650 -
Eupl14g01040 820 FunFam Putative helicase CHR10 226 536 - -
Eupl14g01040 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 215 IPR027417 -
Eupl14g01040 820 Gene3D - 2 226 IPR038718 -
Eupl14g01040 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 473 IPR027417 -
Eupl14g01040 820 CDD SF2-C-SNF 301 444 IPR049730 -
Eupl14g01040 820 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 170 IPR014001 -
Eupl14g01040 820 CDD Macro-Poa1p-like-SNF2 647 807 - -
Eupl14g01040 820 SUPERFAMILY Macro domain-like 648 815 IPR043472 -
Eupl14g01040 820 Gene3D Leucine Aminopeptidase, subunit E, domain 1 647 820 IPR043472 -
Eupl14g01040 820 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 5 551 IPR031053 GO:0003678(InterPro)|GO:0006281(InterPro)|GO:0006338(InterPro)
Eupl14g01040 820 Gene3D - 227 537 IPR027417 -
Eupl14g01040 820 SMART ultradead3 1 178 IPR014001 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01040 K20092 chromodomain-helicase-DNA-binding protein 1-like [EC:5.6.2.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:17242123 Eupl7g01293 Eupl-Chr7:33469814 dispersed
Eupl Eupl-Chr14:17242123 Eupl14g01341 Eupl-Chr14:31222343 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl6g00974 . 195 464 DDM1 gene family AT5G66750 31.058 7.18e-31 128.0
Eupl4g02019 . 202 676 DDM1 gene family AT5G66750 33.577 1.33e-84 282.0
Eupl3g00526 . 195 660 DDM1 gene family AT5G66750 30.814 7.56e-67 238.0
Eupl8g00532 . 196 645 DDM1 gene family AT5G66750 40.86 5.47e-96 323.0
Eupl13g01931 . 202 673 DDM1 gene family AT5G66750 31.107 4.59e-67 241.0
Eupl3g01856 . 24 764 DDM1 gene family AT5G66750 71.146 0.0 1074.0
Eupl1g00481 . 173 726 DDM1 gene family AT5G66750 38.726 3.59e-111 370.0
Eupl8g00944 . 219 698 DDM1 gene family AT5G66750 25.0 5.34e-28 120.0
Eupl1g00471 . 173 726 DDM1 gene family AT5G66750 38.726 3.59e-111 370.0
Eupl13g00225 . 15 583 DDM1 gene family AT5G66750 68.621 0.0 786.0
Eupl13g00226 . 617 764 DDM1 gene family AT5G66750 69.677 9.15e-69 219.0
Eupl13g00324 . 201 655 DDM1 gene family AT5G66750 23.699 7.35e-18 87.0
Eupl13g00558 . 202 672 DDM1 gene family AT5G66750 28.767 4.33e-55 202.0
Eupl2g01415 . 168 681 DDM1 gene family AT5G66750 37.944 6.39e-94 319.0
Eupl14g00390 . 196 645 DDM1 gene family AT5G66750 40.426 2.16e-95 326.0
Eupl1g00416 . 99 519 DDM1 gene family AT5G66750 35.084 6.15e-74 261.0
Eupl7g00692 . 143 677 DDM1 gene family AT5G66750 30.405 5.23e-68 243.0
Eupl5g00629 . 99 513 DDM1 gene family AT5G66750 35.217 5.15e-74 261.0
Eupl5g02238 . 542 712 DDM1 gene family AT5G66750 28.977 8.25e-14 74.7
Eupl14g01341 . 224 681 DDM1 gene family AT5G66750 38.134 4.59e-90 299.0
Eupl10g00285 . 196 727 DDM1 gene family AT5G66750 38.938 1.35e-103 344.0
Eupl7g01725 . 195 655 DDM1 gene family AT5G66750 26.316 3.01e-30 125.0
Eupl3g01997 . 201 381 DDM1 gene family AT5G66750 26.531 1.28e-08 54.3
Eupl14g01040 . 224 681 DDM1 gene family AT5G66750 38.134 5.53e-90 298.0
Eupl3g00412 . 195 506 DDM1 gene family AT5G66750 39.172 7.44e-69 242.0
Eupl3g00413 . 500 690 DDM1 gene family AT5G66750 42.932 1.06e-38 154.0
Eupl7g01293 . 21 739 DDM1 gene family AT5G66750 38.26 8.11e-146 453.0
Eupl5g01608 . 202 659 DDM1 gene family AT5G66750 25.678 1.73e-27 119.0
Eupl12g01142 . 197 729 DDM1 gene family AT5G66750 41.284 4.23e-115 384.0
Eupl12g01106 . 17 739 DDM1 gene family AT5G66750 37.402 5.54e-145 451.0
Eupl12g00819 . 196 726 DDM1 gene family AT5G66750 43.762 1.54e-128 409.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl SNF2-rel_dom 4e-60 CL0023 TR SNF2