AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01043 ATGGGGAGCACTGGTGAAGCTGACCGGAAGCGGCGTCACTTCAGCTCTCTCTCCCCCACCGGTGCCGCTGCTAAGAAGCATCCGTTCTTGCCCTGTTCGGAAGAGAAAAAGCTTGACACTGCTGTACTACAATTTCAAAATCAAAAACTTGTTCAGCAATTAGAAGCTCAGAAGGTTGAGTATTTTGCCCTTGAGAATAAATTCTGTCAGGTGAAGGAGAAACAACAGGCTTATGATGACACATTAATAGTGGTCAATAGGTCTTGGAATCAGTTGGTTGACAACTTGGAATCAAGTTCCTTTCGTGCAAGAAGCTCTTGGAGCAGTGGGCAGGATGTGAAACATTCATCAATAACGGGGGATGAGGCATCATCTCCCCCAGAGGATACTTTTCTTTGCAGGCTTCTAGAGACGGGTGCAACTGAAAGCTGCTCTGCAAATATCTCCCCTAATCAAATGGAAATTGATAACCAAATTGCCAGTGGAACAGCTAGAAGCATCTTACAAAATATAGTAGCTGCTATTAATGACCTGTGGTATTTTAGGGATGGACTTTCTGCTGCGCTGCTGCAGACATTGCCAGATGAGCCCAGCAGACGAAAGACATCTAGTGATTTAGAGATGGAGCTTAAGAACTTGAGACTGGCACTTGGTGATCTTCATTTGAGGCATAAATCAGTGGCAAGTGAAGTGCAGAGCTATCGAGGCAATAATGCAAAGAATAAAGCTGAACTGAAACGCTTGGCAGGGGAATTGGAGAGTACTGTTGCAGAGTTGGAAGAAAGCAACTCTAAACTGGCTACTCTCAAAGCACAAAGAGATGCATTCAAAGGTGCATCTTTCCCTGTATTAAACTTGGGGAACAATCATGTTGCTGGAGAAAAGGCCAGAGATAAGCAAAAAAATTTGCAAGATATGGAGTCTACACTCAAGGAGTTGTTGGAGTTGGCTTCATGTCGATTGCTAGAACTCAAGACACTCCATGAAGAAAGGATAAGAATTTTGAAGCAGTTATCCAATTTGCAGCAGATCGCTTTGAAGGATGTGAAGAGTATTTCCTCGTCCAAAGCCTACCTCTTGGTAAACAATCAGCTTGAAAAATCAAAAGCAGAAGTTGTCCAGTATCAGGCCTTATTTGAGAAACTACAGGTTGAGAAGGATAACTTTGCTTGGCGGGAAAAAGAAATGAATGTGAAAGTTGATTTAGCTGATGTTTTTCGAAGAGCTTCTGCAGTTGCTGACTACCGAATAGCTGATCTAGAAAAAGAGATACAGAAACAGATTGATGAAAGAAATCTGCTTGAAACTAAGCTAAAAGAGGCTTCAAGAGAACCAGGAAGGAAAGAAATCATTGCTGAATTTAAAGCCTTGGTTTCTACATTCCCCAAGAACATGGGTGTTATGCAAAGTCAACTGAGTAAATACAAACAAGCTGCTTCAGAGGTTCATTCTCTACGAGCTGAAGTTCTGTCTCTGTCTAATATTCTTGATAGGAAGGCAAATGAGTTGGAAACTATTTCTGGTAGATCTGCTGAACAGATTGCTGAGATACAAAAATTGCAAGCTGTGGTCCGTGATTTGAAGGAAAGTGATCAAGAGTTGAAGCTAATTCTAGAAATGTATAGACGTGAATCCACTGATTCCAGGGATGTCATAGAAGCAAGAGATTTGGAATACCAGGCATGGGCACAAGTTCAAAGTCTCAAATCTTCTCTTGATGAGCATAGCTTGGAGTTGCGTGTTAAAGCAGCAAATGAAGCTGAAGCCATATCCCAACAGAGGCTGGCGACAGCAGAAGCTGAGATTGCTGACCTGAGACAGAAGTTGGAAGCTTCTGGAAGGGATGTATCTAGTCTTTCTGAAGTCCTGAAATCTAAACATGAGGAGGGTGAAGCCTACTTATCAGAGATTGAGTCAATTGGGCAGGCATACGAAGATATGCAAACTCAAAACCAACACCTGTTGCTACAAATCACAGAGAGAGATGACTACAACATCAAGCTCGTTTTAGAGGGTATGAGGGCAAGACAGCTGCAAGATGCTTTGCGCATGGGAAAACAAGCTATGGAAAAAGAGTTGCAGCAAGTGAATGCATCTCTGAATTTCTATGATTTCAAAGGAGCACGAATTGAAGACCAGCTGAAAATGTGCTCAGAGCATGTTGAGAAACTTGCGGAAGATAAGTGGCAGAGCTTAGCTGCTGTGGAGAATGCCCAAAAGAGGCTGTTGGATGTAAGGAGAGAATCTCAGCAGTTAAAGGAGTCACTGGAGGAATCTCAGTCCAAGGTTGGGAGAAGCCGAGTGGGTGTTGCAGAGCTGCAGATAGAACTAGAGAAAGAGAGGTTTAACAAGAAAAGAATAGAGGAGGAGTTGGAAGTCTTGACAAGGAAAGCTACACTTCTTAGTGTACACACTGAGGGGTCATCAGTCTTGGAGAAGCTTCAGCATGAAATCAGAGAATACAGGGAAATACTCAAGTGCAGTATCTGCCACGACAGACCTAAGGAGGTTGTCATCACCAAGTGCTACCATCTGTTCTGCAACACCTGTGTCCAGAGAACACTTGACGCTCGCCACCGGAAGTGTCCAGTCTGTGCTGCCAGTTTTGGGCCTAGTGATGTCAAATCCGTCTACATATGA 2640 43.33 MGSTGEADRKRRHFSSLSPTGAAAKKHPFLPCSEEKKLDTAVLQFQNQKLVQQLEAQKVEYFALENKFCQVKEKQQAYDDTLIVVNRSWNQLVDNLESSSFRARSSWSSGQDVKHSSITGDEASSPPEDTFLCRLLETGATESCSANISPNQMEIDNQIASGTARSILQNIVAAINDLWYFRDGLSAALLQTLPDEPSRRKTSSDLEMELKNLRLALGDLHLRHKSVASEVQSYRGNNAKNKAELKRLAGELESTVAELEESNSKLATLKAQRDAFKGASFPVLNLGNNHVAGEKARDKQKNLQDMESTLKELLELASCRLLELKTLHEERIRILKQLSNLQQIALKDVKSISSSKAYLLVNNQLEKSKAEVVQYQALFEKLQVEKDNFAWREKEMNVKVDLADVFRRASAVADYRIADLEKEIQKQIDERNLLETKLKEASREPGRKEIIAEFKALVSTFPKNMGVMQSQLSKYKQAASEVHSLRAEVLSLSNILDRKANELETISGRSAEQIAEIQKLQAVVRDLKESDQELKLILEMYRRESTDSRDVIEARDLEYQAWAQVQSLKSSLDEHSLELRVKAANEAEAISQQRLATAEAEIADLRQKLEASGRDVSSLSEVLKSKHEEGEAYLSEIESIGQAYEDMQTQNQHLLLQITERDDYNIKLVLEGMRARQLQDALRMGKQAMEKELQQVNASLNFYDFKGARIEDQLKMCSEHVEKLAEDKWQSLAAVENAQKRLLDVRRESQQLKESLEESQSKVGRSRVGVAELQIELEKERFNKKRIEEELEVLTRKATLLSVHTEGSSVLEKLQHEIREYREILKCSICHDRPKEVVITKCYHLFCNTCVQRTLDARHRKCPVCAASFGPSDVKSVYI 879
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01043 879 Coils Coil 588 615 - -
Eupl14g01043 879 SMART ring-2 827 865 IPR001841 -
Eupl14g01043 879 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Eupl14g01043 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Eupl14g01043 879 Coils Coil 296 316 - -
Eupl14g01043 879 CDD RING-HC-Bre1-like 819 877 - -
Eupl14g01043 879 Pfam Zinc finger, C3HC4 type (RING finger) 827 865 IPR018957 GO:0046872(InterPro)
Eupl14g01043 879 Coils Coil 735 762 - -
Eupl14g01043 879 Coils Coil 417 444 - -
Eupl14g01043 879 Coils Coil 510 530 - -
Eupl14g01043 879 MobiDBLite consensus disorder prediction 1 28 - -
Eupl14g01043 879 Coils Coil 770 797 - -
Eupl14g01043 879 SUPERFAMILY RING-U-box 820 878 - -
Eupl14g01043 879 Coils Coil 365 385 - -
Eupl14g01043 879 Coils Coil 242 272 - -
Eupl14g01043 879 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 808 879 IPR013083 -
Eupl14g01043 879 PANTHER RING FINGER PROTEIN-RELATED 3 879 IPR013956 GO:0004842(InterPro)|GO:0005634(PANTHER)|GO:0033503(PANTHER)|GO:0061630(PANTHER)|GO:0071894(PANTHER)
Eupl14g01043 879 Coils Coil 47 67 - -
Eupl14g01043 879 MobiDBLite consensus disorder prediction 1 15 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01043 K10696 E3 ubiquitin-protein ligase BRE1 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:17390192 Eupl14g01339 Eupl-Chr14:31130025 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00869 . 154 640 RAD5/RAD16-like gene family AT1G02670 22.05 1.43e-13 73.6
Eupl2g00111 . 1178 1277 RAD5/RAD16-like gene family AT1G61140 92.0 1.68e-60 197.0
Eupl2g00112 . 567 1175 RAD5/RAD16-like gene family AT1G61140 59.97 0.0 713.0
Eupl2g00113 . 134 226 RAD5/RAD16-like gene family AT1G50410 38.71 1.91e-10 62.4
Eupl5g00779 . 16 862 RAD5/RAD16-like gene family AT5G05130 63.74 0.0 1101.0
Eupl2g00362 . 72 831 RAD5/RAD16-like gene family AT1G05120 59.207 0.0 937.0
Eupl4g02201 . 67 981 RAD5/RAD16-like gene family AT1G50410 61.628 0.0 1124.0
Eupl6g00457 . 66 833 RAD5/RAD16-like gene family AT1G05120 62.362 0.0 1046.0
Eupl7g00770 . 369 1277 RAD5/RAD16-like gene family AT5G43530 71.164 0.0 1370.0
Eupl1g00505 . 491 996 RAD5/RAD16-like gene family AT5G22750 25.914 3.60e-42 166.0
Eupl5g01806 . 1 1029 RAD5/RAD16-like gene family AT5G22750 70.455 0.0 1493.0
Eupl5g02385 . 485 736 RAD5/RAD16-like gene family AT5G22750 32.45 2.18e-35 145.0
Eupl14g01339 . 595 663 RAD5/RAD16-like gene family AT5G05130 34.286 1.28e-08 57.0
Eupl14g01043 . 595 663 RAD5/RAD16-like gene family AT5G05130 34.286 1.28e-08 57.0
Eupl12g00431 . 155 652 RAD5/RAD16-like gene family AT1G02670 26.11 7.47e-24 107.0