AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01044 ATGACGAGTCGCCGCTTCTTTACAGCGATCCTCTTCATTTTCTTCCTGTCCGCCGCGGCCGGAGACTCCAAATCTGATGAGTGCGTTTACACCATTTACATCAGGACAGGATCCATCATCAAGGCCGGAACGGACTCCAAGATCAGCGTTTCCTTCGGTGATGCAGCGGGCCGATCAGTGCAAATCCCAGATCTCGAGGCATGGGGATTAATGGGACCCACATACGACTACTACGAGCGGGGTAATCTCGACATATTCAGCGCCCGGGGTCCATGCATAGGCGCTCCACTCTGCAGTCTTAACATAACATCAGACGGATCAGGAGCCCACCACGGGTGGTACTGTGAATACTTGGAGGTGACATCCACTGGGGCCCACAAGGACTGCAGCCAGACCATTTTCTACGTCCAGCAGTGGCTTGCCAGCGACGCTCCTCCCTACGCGCTCACTGCGCTCCTCGATGGTTGTGCACAACAAACTACCACTACCACTACCACTACCACCCCTGCGGCGCACGCTAGAAACGGGCCTCTCGTTGTTGGGAACCTTCAAGGAGCTGTTTCTCAGTAA 570 55.26 MTSRRFFTAILFIFFLSAAAGDSKSDECVYTIYIRTGSIIKAGTDSKISVSFGDAAGRSVQIPDLEAWGLMGPTYDYYERGNLDIFSARGPCIGAPLCSLNITSDGSGAHHGWYCEYLEVTSTGAHKDCSQTIFYVQQWLASDAPPYALTALLDGCAQQTTTTTTTTTPAAHARNGPLVVGNLQGAVSQ 189
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01044 189 SUPERFAMILY Lipase-lipooxygenase domain (PLAT-LH2 domain) 29 143 IPR036392 GO:0005515(InterPro)
Eupl14g01044 189 Pfam Embryo-specific protein 3, (ATS3) 22 126 IPR010417 -
Eupl14g01044 189 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 11 162 - -
Eupl14g01044 189 ProSiteProfiles PLAT domain profile. 28 154 IPR001024 GO:0005515(InterPro)
Eupl14g01044 189 Gene3D PLAT-LH2 domain 29 145 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01044 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr13:35487156 Eupl14g01044 Eupl-Chr14:17421346 dispersed
Eupl Eupl-Chr14:17421346 Eupl3g01422 Eupl-Chr3:40306515 dispersed
Eupl Eupl-Chr14:17421346 Eupl14g01338 Eupl-Chr14:31127096 wgd