AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01056 ATGACGAGGAGGTGCTCGCATTGCAGTCACAATGGGCACAATTCGAGAACTTGCCCTAACAGAGGGGTCAAGCTCTTCGGGGTCAGGCTAACGGATGGGTCGATCAGGAAGAGTGCGAGTATGGGGAATCTAACTCACTACACCGGATCAAATAACGGGAATCACCATAATAATAGCAACAACAATCCTGGTTCGCCGGGTGAGACTCCGGACCACGGTGCGCCCGCAGATGGTTACGCTTCGGAGGATTTCGTCCAGGGCTCGTCTTCAAGTTGCCGCGAGCGAAAGAAAGGTGTGCCGTGGACTGAAGAGGAACACAGAATGTTTCTTCTTGGTTTGCAGAAGCTCGGCAAAGGTGATTGGCGTGGTATAGCACGCAATTATGTAATATCAAGGACCCCCACTCAGGTGGCCAGCCATGCTCAGAAATATTTCATCCGGCAAAGCCATGTGTCCAGGAGAAAAAGACGGTCCAGCCTGTTTGATATCATAGCAGATGAATCAGTCGACACTCCTCAAGTTGTATCACAGGAATTGTTTCCTATCAGCCATCCACAAGCTCAAACACAAAGCAACAATCCATTGCCAGCTCCACCAGCTCTGGATGAAGAATGTGAATCGATGGATTCTGCCAACTCCAATGATGGAGAAGCTGCCCTTCCAACACCAGAGAGTTCACAGTGCAATTACCCAGTAATATTTCCTGCTTATTTCTCACCGTTCTTTCCATTTTCCTTCCCATTTTGGCCGGGATACACTACTGAGCCTACGACGAAAGAGGCACATGAAGTAGTTAAGCCAACAGCAATACATTCAAAGAGTCCCATCAATGTTGATGAGCTGGTGGGCATGTCAAAACTGAGCCTAGGAGAATCTCTTGGTCACTCAGGGCCTTCATCTCTCTCTCTAAAATTGCTCGAAGGTTCCAGTAGGCAGTCAGCTTTCCATGCTAACCCAACAACAGACAGCTCAAGCATGAACTCAAGCAGCAGTCCAATTCATGCAGTCTAG 1011 48.66 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYTGSNNGNHHNNSNNNPGSPGETPDHGAPADGYASEDFVQGSSSSCRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSHVSRRKRRSSLFDIIADESVDTPQVVSQELFPISHPQAQTQSNNPLPAPPALDEECESMDSANSNDGEAALPTPESSQCNYPVIFPAYFSPFFPFSFPFWPGYTTEPTTKEAHEVVKPTAIHSKSPINVDELVGMSKLSLGESLGHSGPSSLSLKLLEGSSRQSAFHANPTTDSSSMNSSSSPIHAV 336
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01056 336 Pfam Myb-like DNA-binding domain 99 145 IPR001005 -
Eupl14g01056 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 148 IPR006447 GO:0003677(InterPro)
Eupl14g01056 336 Gene3D - 99 151 - -
Eupl14g01056 336 MobiDBLite consensus disorder prediction 37 99 - -
Eupl14g01056 336 MobiDBLite consensus disorder prediction 37 67 - -
Eupl14g01056 336 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
Eupl14g01056 336 SMART sant 97 147 IPR001005 -
Eupl14g01056 336 FunFam transcription factor MYB1R1 99 150 - -
Eupl14g01056 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 149 IPR017930 -
Eupl14g01056 336 PANTHER TRANSCRIPTION FACTOR KUA1 1 285 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Eupl14g01056 336 MobiDBLite consensus disorder prediction 1 21 - -
Eupl14g01056 336 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Eupl14g01056 336 MobiDBLite consensus disorder prediction 184 224 - -
Eupl14g01056 336 MobiDBLite consensus disorder prediction 312 336 - -
Eupl14g01056 336 CDD SANT 100 145 IPR001005 -
Eupl14g01056 336 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01056 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:17964566 Eupl8g00784 Eupl-Chr8:21953250 dispersed
Eupl Eupl-Chr14:17964566 Eupl14g01325 Eupl-Chr14:30639140 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl Myb_DNA-binding 1.9e-11 CL0123 TF MYB-related