AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01070 | ATGTCGCCAGAGATGGAGATGTACGGACTTCCTGCCTCTGATTTCTTCCACATCGACGACCTCCTCGACTTCTCAAACGACGACTTCTTCTCCTCCACTACCACCACCAACGATTCCCACCTCCCCGCACAGGAAAATCCATCCGGAATCCGCCCTTCCACCACCGCCACCGACATTACTAACCAAAACCGGACACCTGATTTCCCCGACGATCTCTGCGTTCCTAGCGACGATGTAGCAGAGCTGGAATGGCTGTCGAAGTTCGTGGACGACTCGTTCTCTGACTTCCCGATCAACGATCTTGCCGGAAATACAAACTTCCGGCATGATGCGTCAGTTCCTGGCCGAGCTAGGACTAAACGCTCTAGAGCAGCGACGACGCATAACAGCTGGACTTTCTTGCCAGAATCTGACATTTTGGCTACTGGTAAGTCTAAGCAAACTAGTTCAAATAACAATAAGAAGAAGGAGAGTTCTTCTTCTTCGGCATCTTCAGGTGTTGCCGCCGGAGATCAGTTCTCCTCGTTGTCGCCTTCATCAGGAGGACGTAAATGCACACACTGCGAATCAGAGAAAACGCCGCAGTGGCGCACAGGACCAATGGGACCTAAGACGCTATGCAACGCGTGTGGCGTACGATACAAATCAGGTCGACTTGTTCCGGAGTACCGTCCGGCGGCGAGTCCAACGTTCGTGTTAACTCAGCACTCCAACTCTCATCGGAAAGTAATGGAACTCCGGCGACAGAAAGAAACTGTCCGGCAAGATAACAACCGCCACGAGTTCTACCACCACCCTCATCAAGACTTCAAGGTTTGCTGA | 822 | 52.07 | MSPEMEMYGLPASDFFHIDDLLDFSNDDFFSSTTTTNDSHLPAQENPSGIRPSTTATDITNQNRTPDFPDDLCVPSDDVAELEWLSKFVDDSFSDFPINDLAGNTNFRHDASVPGRARTKRSRAATTHNSWTFLPESDILATGKSKQTSSNNNKKKESSSSSASSGVAAGDQFSSLSPSSGGRKCTHCESEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKETVRQDNNRHEFYHHPHQDFKVC | 273 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01070 | 273 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 181 | 243 | - | - | |
| Eupl14g01070 | 273 | ProSiteProfiles | GATA-type zinc finger domain profile. | 179 | 215 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Eupl14g01070 | 273 | CDD | ZnF-GATA | 184 | 231 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Eupl14g01070 | 273 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Eupl14g01070 | 273 | PIRSF | Txn-fac-GATA-plant | 5 | 272 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
| Eupl14g01070 | 273 | SMART | GATA-3 | 179 | 229 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Eupl14g01070 | 273 | Gene3D | - | 181 | 263 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
| Eupl14g01070 | 273 | ProSitePatterns | GATA-type zinc finger domain. | 185 | 210 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Eupl14g01070 | 273 | FunFam | GATA transcription factor | 176 | 261 | - | - | |
| Eupl14g01070 | 273 | Pfam | GATA zinc finger | 185 | 219 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Eupl14g01070 | 273 | MobiDBLite | consensus disorder prediction | 142 | 184 | - | - | |
| Eupl14g01070 | 273 | PANTHER | GATA TRANSCRIPTION FACTOR | 15 | 251 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
| Eupl14g01070 | 273 | MobiDBLite | consensus disorder prediction | 142 | 199 | - | - | |
| Eupl14g01070 | 273 | MobiDBLite | consensus disorder prediction | 34 | 66 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01070 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr14:18570544 | Eupl9g00190 | Eupl-Chr9:6607023 | dispersed | |
| Eupl | Eupl-Chr13:26934488 | Eupl14g01070 | Eupl-Chr14:18570544 | transposed | |
| Eupl | Eupl-Chr14:14715912 | Eupl14g01070 | Eupl-Chr14:18570544 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Eupl11g01126 | . | 25 | 135 | C2C2-Gata Transcription Factor family | AT5G49300 | 43.75 | 4.77e-20 | 79.7 | |
| Eupl14g01144 | . | 1 | 508 | C2C2-Gata Transcription Factor family | AT4G17570 | 50.376 | 3.51e-138 | 408.0 | |
| Eupl9g00190 | . | 48 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 53.584 | 9.11e-91 | 273.0 | |
| Eupl3g00544 | . | 10 | 228 | C2C2-Gata Transcription Factor family | AT4G36240 | 39.837 | 2.80e-44 | 147.0 | |
| Eupl1g01505 | . | 20 | 263 | C2C2-Gata Transcription Factor family | AT4G32890 | 35.831 | 1.26e-43 | 150.0 | |
| Eupl3g01897 | . | 17 | 294 | C2C2-Gata Transcription Factor family | AT3G50870 | 43.86 | 1.26e-55 | 178.0 | |
| Eupl13g01311 | . | 77 | 249 | C2C2-Gata Transcription Factor family | AT4G34680 | 40.437 | 3.17e-40 | 136.0 | |
| Eupl4g00483 | . | 13 | 119 | C2C2-Gata Transcription Factor family | AT5G49300 | 40.367 | 2.80e-16 | 73.6 | |
| Eupl7g00591 | . | 20 | 265 | C2C2-Gata Transcription Factor family | AT4G32890 | 38.462 | 5.79e-43 | 145.0 | |
| Eupl1g00664 | . | 80 | 261 | C2C2-Gata Transcription Factor family | AT4G32890 | 40.708 | 9.09e-43 | 146.0 | |
| Eupl14g00984 | . | 1 | 251 | C2C2-Gata Transcription Factor family | AT2G45050 | 51.351 | 6.04e-74 | 225.0 | |
| Eupl8g00888 | . | 1 | 509 | C2C2-Gata Transcription Factor family | AT4G17570 | 52.166 | 4.07e-152 | 444.0 | |
| Eupl10g00766 | . | 34 | 102 | C2C2-Gata Transcription Factor family | AT4G16141 | 39.726 | 4.97e-06 | 40.8 | |
| Eupl10g00924 | . | 14 | 331 | C2C2-Gata Transcription Factor family | AT5G25830 | 51.343 | 3.50e-91 | 274.0 | |
| Eupl13g00253 | . | 17 | 294 | C2C2-Gata Transcription Factor family | AT3G50870 | 44.211 | 2.00e-56 | 180.0 | |
| Eupl13g00358 | . | 1 | 331 | C2C2-Gata Transcription Factor family | AT5G66320 | 54.167 | 5.56e-84 | 256.0 | |
| Eupl10g01100 | . | 118 | 230 | C2C2-Gata Transcription Factor family | AT4G26150 | 47.107 | 8.04e-26 | 103.0 | |
| Eupl9g00412 | . | 118 | 352 | C2C2-Gata Transcription Factor family | AT4G26150 | 41.597 | 2.39e-39 | 139.0 | |
| Eupl5g01578 | . | 11 | 291 | C2C2-Gata Transcription Factor family | AT1G08010 | 36.474 | 5.08e-47 | 160.0 | |
| Eupl5g00406 | . | 92 | 129 | C2C2-Gata Transcription Factor family | AT2G18380 | 81.579 | 4.23e-17 | 75.5 | |
| Eupl14g01081 | . | 1 | 508 | C2C2-Gata Transcription Factor family | AT4G17570 | 50.376 | 5.02e-138 | 407.0 | |
| Eupl7g00587 | . | 7 | 262 | C2C2-Gata Transcription Factor family | AT3G24050 | 41.729 | 2.53e-43 | 145.0 | |
| Eupl14g01070 | . | 1 | 251 | C2C2-Gata Transcription Factor family | AT2G45050 | 51.969 | 1.66e-73 | 224.0 | |
| Eupl3g02048 | . | 2 | 332 | C2C2-Gata Transcription Factor family | AT5G66320 | 51.642 | 2.25e-73 | 233.0 | |
| Eupl7g01482 | . | 32 | 139 | C2C2-Gata Transcription Factor family | AT5G49300 | 66.667 | 5.69e-41 | 131.0 | |
| Eupl12g00938 | . | 38 | 149 | C2C2-Gata Transcription Factor family | AT3G06740 | 68.103 | 3.25e-46 | 145.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Eupl | GATA | 7.4e-15 | CL0839 | TF | C2C2-GATA |