AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01077 ATGCCCTACTCACCAGAGAGAAACCCTAGACCGCAATTGAAGAGGCCTCCGAGCTGGCCAGACCTCTGGTTCAAAGGAAAAGCTCTCAAGCATGTGGTTTTCAAGATGCAGCTCGATTCTCTCACCACCGCAACACCAGAGAAAAGACCAACACCAGCACCCCAACAGAAAGAAACCATAACCCTAGATGATTCTCCGGGGACCAACCTGACTTCTCTCTTATCTGACGAGCTTCTTCTTCGGATCTTCTCCAAGCTCCCAGACTCGCAACGAAACCCTAATTCGCTCGTATGCAAGCGATGGATGATTCTGCAAGGTCGTCTGGTTCGCTCCGTCAAGCTCCTCGACTGGTTTTTTCTCGAATCAGGTCGGCTTCTTTCTCGGTTCCCTAATCTCACTGACGTTGATCTCGTTCGCGCCTGTATTGAGTCGCCGAAGAATTCCGGAATCTTGTTGACTAATCGTTTAATCACGCTTCATCTCGATTCTGATTACTTGGTGGGTCCCTTTATCCGTGAGGACAATTTGCTGCCGTTGGATTCGATTGATCGAGGTCTACGAATTCTCGCCCGTGGATGCCCTAATTTACGGAAACTTGTTCTCATTGCTGCTACGGAGAAGGGGCTTTCGAGTGTCGCCGAAGAGTGTCCGACGTTGCAGGAATTGGAGCTGCACCGGTGCACGGATCTCTCCTTGCGTGGGATATCTGCTTGCCAGAATTTACAGATCTTGAAATTGGTTGGCATTGTTGATGGATTTTACGGTACAGTGATTTCGGATATTGGATTGACGATCTTGGCGCACGGATGTAAACGGCTGGTAAAGCTCGAGTTGAGCGGGTGCGAGGGTAGTTATGATGGGATTAGAGCAATTGGCCAATGCTGCCACATGCTGGAGGAGCTCACACTTTGCAACCACATGATGGATGAGGGGTGGATGGCTGGGTTGTCATTCTGTGGAAATTTGAAGACTTTGAAGCTTCAGTCATGCAAGAGGATCGATCTAAATCCTGGGCCAGTCGAGCATTTGGGGTCTTGCCCAACTCTTGAAGGGTTGCATCTGCAGCGGTGCCAATTGCGCAATAAGCAGAGTATGGCTGCATTGTTTCAGGTGTGCAGCGCTGTTAGGGAGATTGTTTTTCAGGACTGTTGGGGATTGGACAATGAAATTTTTGGCGTTGCAAGTACTTGCAGGAGGGTAAAGATTATATCCTTGGAAGGATGCTCGTTGCTAACAACAGAAGGTCTTGAGTCAGTAATTCTTTCTTGGGTGGAACTTCAAAGGCTTAGAGTAGTCTCATGTAACAATATAAGGGACAGTGAAGTCACTCCTGCATTATCAAGTTTGTTTTCTGTCCTTAAAGAGTTGAAATGGCGACCAGATTCCAGATCTGTTCTCTCATCAAGTCTTGCAGGGACTGGAGTGGGAAAGAAAGGTGGTAGATTTTTTAAGAGGGTTTGA 1461 47.91 MPYSPERNPRPQLKRPPSWPDLWFKGKALKHVVFKMQLDSLTTATPEKRPTPAPQQKETITLDDSPGTNLTSLLSDELLLRIFSKLPDSQRNPNSLVCKRWMILQGRLVRSVKLLDWFFLESGRLLSRFPNLTDVDLVRACIESPKNSGILLTNRLITLHLDSDYLVGPFIREDNLLPLDSIDRGLRILARGCPNLRKLVLIAATEKGLSSVAEECPTLQELELHRCTDLSLRGISACQNLQILKLVGIVDGFYGTVISDIGLTILAHGCKRLVKLELSGCEGSYDGIRAIGQCCHMLEELTLCNHMMDEGWMAGLSFCGNLKTLKLQSCKRIDLNPGPVEHLGSCPTLEGLHLQRCQLRNKQSMAALFQVCSAVREIVFQDCWGLDNEIFGVASTCRRVKIISLEGCSLLTTEGLESVILSWVELQRLRVVSCNNIRDSEVTPALSSLFSVLKELKWRPDSRSVLSSSLAGTGVGKKGGRFFKRV 486
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01077 486 Gene3D Ribonuclease Inhibitor 338 470 IPR032675 -
Eupl14g01077 486 PANTHER UNCHARACTERIZED 72 456 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Eupl14g01077 486 SUPERFAMILY RNI-like 255 456 - -
Eupl14g01077 486 Gene3D Ribonuclease Inhibitor 253 337 IPR032675 -
Eupl14g01077 486 Gene3D Ribonuclease Inhibitor 170 252 IPR032675 -
Eupl14g01077 486 MobiDBLite consensus disorder prediction 43 65 - -
Eupl14g01077 486 SMART LRR-CC-2 216 241 IPR006553 -
Eupl14g01077 486 SMART LRR-CC-2 397 422 IPR006553 -
Eupl14g01077 486 SMART LRR-CC-2 346 371 IPR006553 -
Eupl14g01077 486 SMART LRR-CC-2 270 294 IPR006553 -
Eupl14g01077 486 SUPERFAMILY F-box domain 65 126 IPR036047 GO:0005515(InterPro)
Eupl14g01077 486 FunFam F-box protein At5g51380 68 334 - -
Eupl14g01077 486 Gene3D - 70 106 - -
Eupl14g01077 486 SUPERFAMILY RNI-like 113 248 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01077 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:14546350 Eupl14g01077 Eupl-Chr14:18736821 dispersed
Eupl Eupl-Chr5:49497089 Eupl14g01077 Eupl-Chr14:18736821 transposed
Eupl Eupl-Chr14:14516823 Eupl14g01077 Eupl-Chr14:18736821 wgd