AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01083 ATGCTTCATACTTTAGCTTCTTCTTCGTCTCCTTCTCTCGTCCTTATCATCTCCTCTTCCTCTCGCTTCTCTCCTCGCTCTTCCTCTCTCCTCCAACTCGGCAGAATCCAAATAAATCTCTCAACATTTCCTCGAAATTCCAGACCCATGTCCCTGTTCACAAGCCCCATGAACTGGTTAGGAAAACTAGGGTTAGGGTTCGGTAACAAAGCTTCTGAAATCTCCATGGATTCATCTTCTTCTTCATCGATTGCTCAGGGTCCTGACGAAGATATTCCTGCTCCGGGGCAGCAGTTCGCTCAGTTCGGCGCCGGATGCTTTTGGGGCGTTGAATTAGCGTTCCAGAGAGTCCCGGGAGTTTCTAAGACGGAGGTTGGGTACAGTCAAGGGTTTCTGCACAATCCCACGTACAATGATGTTTGTTCGGGCACAACGAATCATTCGGAGGTCATTAGGGTTCAATACGATCCCAAGGAGTGCAGTTTTGAGAATTTGCTCGATTTGTTTTGGGCCCGACACGATCCAACCGCTCTTAATCGTCAGGGAAATGATGTGGGTACACAATACAGATCTGGAATATACTTCTACACACCTGAGCAGGAGAAAGAAGCACGGGAGAGTCTGGAGCGGCAGCAGAAGCTCTTGAACAGGAAGATTGTTACTGAGATTCTTCCTGCGAAGAAGTTCTACAGAGCGGAAGAATACCACCAGCAATATCTTGCAAAAGGGGGCCGCTTCGGTTTCAAGCAGTCAGCTGATAAAGGCTGCAATGATCCAATCCGATGCTATGGCTGA 795 48.3 MLHTLASSSSPSLVLIISSSSRFSPRSSSLLQLGRIQINLSTFPRNSRPMSLFTSPMNWLGKLGLGFGNKASEISMDSSSSSSIAQGPDEDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYSQGFLHNPTYNDVCSGTTNHSEVIRVQYDPKECSFENLLDLFWARHDPTALNRQGNDVGTQYRSGIYFYTPEQEKEARESLERQQKLLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSADKGCNDPIRCYG 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01083 264 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 97 254 IPR002569 GO:0008113(InterPro)
Eupl14g01083 264 SUPERFAMILY Peptide methionine sulfoxide reductase 92 251 IPR036509 GO:0008113(InterPro)
Eupl14g01083 264 Gene3D Peptide methionine sulphoxide reductase MsrA 82 264 IPR036509 GO:0008113(InterPro)
Eupl14g01083 264 FunFam Peptide methionine sulfoxide reductase 87 264 - -
Eupl14g01083 264 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 80 262 IPR050162 GO:0005737(PANTHER)|GO:0008113(PANTHER)|GO:0034599(PANTHER)|GO:0036456(PANTHER)
Eupl14g01083 264 Pfam Peptide methionine sulfoxide reductase 100 242 IPR002569 GO:0008113(InterPro)
Eupl14g01083 264 NCBIfam peptide-methionine (S)-S-oxide reductase MsrA 100 242 IPR002569 GO:0008113(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01083 K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:4318451 Eupl14g01083 Eupl-Chr14:19268106 transposed
Eupl Eupl-Chr14:19268106 Eupl14g01142 Eupl-Chr14:23101432 wgd