AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01095 ATGACTTTTTTGGAGGTAAAAAATCAACTTATAACTTCTACTACAAGTAGAAGTGCTTTTACTTCTCGTTCCCAAATGCCCCCTAAATCCAGCAAAGAAGCTATGGCAGCCTCCCAGTGGCGTAATCTTCCTTCCACCCACCTCGACTTCTCTCAACGCCTCTCGAAACAATTGGATTTTGCCATCGCTCGGGAGGAATCTATCTGGAGAGAAAAATCTCGGGAGTTGTGGCTTAAAGAAGGAGATTGGAATACCAAGTTTTTCCATCTCTCAACACTTATTCGTCGACGTAATAATAAAATCGAGAGTATCAAGGACGACACTAGCCAATGGCAAAGTACCCGTGGTGGAGTGGGTAAAGCCTTTGGTCAGTTTTTACTCCCAATTGTTCACTTCCACTCAACCCAGGAATCTGGATCTTATTCAAGGTGTTATTTCCATAAGTGTGTCTGGCCCCCCCTCCCCCCATCTCTTAAGGAAATTAAAGTGGCTACTTTCAGCATAGGTGCTCACAAAGCTCCTAGCCCTGACGGGTTTACCGGGTTTTTCTTCCAGACCTTCTGGGAAGAGACAAAAGACGACATCCATGCTTTGGTACAGGCCTTCTTTCTTCATGACTGTGAGCTTCAACGCATCAACCATACCCACATTGCTTTTATTCCCAAATCCAATGGTCCCGTGTCCCTTACACAATTTAGACCAATCAGCCTGTGCAATGTGATCTATAAGATTATCTCAAAAATTCTGACTTGTCAACTGCGTCAAATCATTGGTAAGCTTATTTCTCCGAATCAAGCTGCCTTTATTTCGGGTCGTCTTACTTCGGACAATACCATCCTCACACAGGAACTCATGCACCATATTCATAAAAAGAAAGGCAAAGGAGGTCTTATGGCAATCAAGTTGGATATGGTGAAAGCCTATGACCGGATTGAATGGTCTTTTCTGAGCAACATTAATCTAGCCGTGGGCTTCGAGGAGAAGCTTCACCACCTTCACGGCATCCGCATCACCAAAAATTGCCCACCCATATCTCATCTCTTTTTTGCAGATGATTGTTTTGTTTTCTGTAAGGCAAACCTGGTAGAAGCCCAAGCTCTCCAAGATATTCTTCATGCCTTCTGCGAAGGATCTGGCCAGCAAATCAACTATGAAAAATCCGGTATTATGTTTAGTTCCAATCTTCACAGACGGCAGAAGAAAGCAATGCCCTTCATTCTCAGCATTAAGAATCTCTTCCTCTCTGAGAAGTATTTGGGTACACCCATGTTCATAGGCCGATCCAAGACTAAAGCCTTTCACAGTACACGTGAGCATATCGAACAAATCATCCCAGGTTGGTGTGCCCGCACACTCTCCCAAGCAGGTAGATCTACCCTTCTCAAGAGCGTGGTATCTGCCTTACCGATGTATAGCATGTCATCATTCATGTTCCCTCTCACCTTGTGTAATAAATTGGACTCCATGGCAAATCACTTTTGGTGGCAAGGTGGACTCCTCAAAAAATCTCTTCACATTTTGAGTTGGGCTTCCATATGTACTCCCAAAGCCTTGGGCGGTTTGGATTTTCGCAAATTCCATGATGTCAACTTGGCCTTGCTAGTCAAAAATGTGTGGAAATTTTTAACTGAACCTGATTCTCTACTATCTTGCACTCTTAAAGGAAAATATTTCCCCAAGTCATCGCTTTTGGAGACTTCCCCCAAGCAGAGTGACCCGTGGGTTTGGAAGAGCATTCTTCAAGCTAAAGCTCTCTTTAAACATAACTTCATCAAATTGATTGGCTCTGGTCTTCTTACGCATATTTGGACTGACCCTTGGATATTTGATGGGCATCATCTTTTTCATCCCACCCGCCCACCTGATTGCTCCCTTACTATAGTTGCGGAATTAATCACAGACAATCGCACGTGGAACGTCTCCTTGATTCATTCCCTTTTCAATCCTGAGAATCTAATACTATTCTCTCCATTGAACTTAGCCAACATTCCTTTGATGACCGGTGGCTTTGGTCGCTAG 2019 43.78 MTFLEVKNQLITSTTSRSAFTSRSQMPPKSSKEAMAASQWRNLPSTHLDFSQRLSKQLDFAIAREESIWREKSRELWLKEGDWNTKFFHLSTLIRRRNNKIESIKDDTSQWQSTRGGVGKAFGQFLLPIVHFHSTQESGSYSRCYFHKCVWPPLPPSLKEIKVATFSIGAHKAPSPDGFTGFFFQTFWEETKDDIHALVQAFFLHDCELQRINHTHIAFIPKSNGPVSLTQFRPISLCNVIYKIISKILTCQLRQIIGKLISPNQAAFISGRLTSDNTILTQELMHHIHKKKGKGGLMAIKLDMVKAYDRIEWSFLSNINLAVGFEEKLHHLHGIRITKNCPPISHLFFADDCFVFCKANLVEAQALQDILHAFCEGSGQQINYEKSGIMFSSNLHRRQKKAMPFILSIKNLFLSEKYLGTPMFIGRSKTKAFHSTREHIEQIIPGWCARTLSQAGRSTLLKSVVSALPMYSMSSFMFPLTLCNKLDSMANHFWWQGGLLKKSLHILSWASICTPKALGGLDFRKFHDVNLALLVKNVWKFLTEPDSLLSCTLKGKYFPKSSLLETSPKQSDPWVWKSILQAKALFKHNFIKLIGSGLLTHIWTDPWIFDGHHLFHPTRPPDCSLTIVAELITDNRTWNVSLIHSLFNPENLILFSPLNLANIPLMTGGFGR 672
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01095 672 CDD RT-nLTR-like 214 423 - -
Eupl14g01095 672 SUPERFAMILY DNA-RNA polymerases 168 391 IPR043502 -
Eupl14g01095 672 PANTHER NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED 31 505 IPR052343 -
Eupl14g01095 672 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 220 330 IPR000477 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01095 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:19971754 Eupl1g00413 Eupl-Chr1:17205213 dispersed
Eupl Eupl-Chr11:22798512 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr13:28448660 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr13:29367797 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr1:4485688 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr9:8559068 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr1:4486210 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr1:8958050 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr3:5130697 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr14:19971754 Eupl14g01132 Eupl-Chr14:22439030 wgd
Eupl Eupl-Chr14:19971754 Eupl4g01914 Eupl-Chr4:43925560 wgd