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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01098 ATGGATACAACACCACCAGACGAAAGCCCTTCTGCTAAAAGATGGCTTCCTCTCGAAGCTAATCCTGATATTATGAATCAGTTCCTTTGGGGACTCGGTCTTCCAGAAGAAGAAGCAGAGTTCTATGATGTGTATGGTTTGGATGAAGAACTCTTGGAAATGGTTCCAAAGCCTGTACTGGCTGTGTTGTTCCTTTTCCCCATCACTGCCGAGGTTGAAACAGAGAGAATGTTGGAGAAAGAGAGTGTGAAGAAGGAGCATAGTGAAAGGGTATATTTCTTGAAACAAACTGTGGGAAATGCTTGTGGAACAATTGGACTTCTTCATGCTATTGGGAATGTATCTTCAGAGATCAAGCTTTTGGAGGGCTCATACTTGGATAGATTCTTCAAATCAACAGCTAACATGGATCCATTGGAGCGTGCGGATTTTCTCGAGAAAGATAGAGAACTGGAGGTTGCACATTCAGTAGCAGCTACTGCTGGTGATACAGAGGCGCCAAATATAAACACGAATGTGGACACTCATTTTATTTGCTTCACACATGTTGATGGAGAACTCTATGAGCTTGATGGACGAAAGTCACAAGCAATATCACTTGGTTCCTCTTCACCCAATAGCTTACTTCAGGATGCTGCAGAAGTCATAAAAGCAATGATCCAAAAAAATCCTGACTCGATAAACTTCAATGTCATCGCACTTTCAAGAAAAGCTGGGGGAGCATATTAA 729 42.25 MDTTPPDESPSAKRWLPLEANPDIMNQFLWGLGLPEEEAEFYDVYGLDEELLEMVPKPVLAVLFLFPITAEVETERMLEKESVKKEHSERVYFLKQTVGNACGTIGLLHAIGNVSSEIKLLEGSYLDRFFKSTANMDPLERADFLEKDRELEVAHSVAATAGDTEAPNINTNVDTHFICFTHVDGELYELDGRKSQAISLGSSSPNSLLQDAAEVIKAMIQKNPDSINFNVIALSRKAGGAY 242
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01098 242 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 236 IPR001578 GO:0004843(InterPro)|GO:0004843(PANTHER)|GO:0005737(PANTHER)|GO:0006511(InterPro)|GO:0016579(PANTHER)
Eupl14g01098 242 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 55 67 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 96 113 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 171 182 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 17 34 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 187 197 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 Gene3D - 9 237 IPR036959 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 15 221 IPR001578 GO:0004843(InterPro)|GO:0006511(InterPro)
Eupl14g01098 242 FunFam Ubiquitin carboxyl-terminal hydrolase 9 237 - -
Eupl14g01098 242 CDD Peptidase-C12-UCH-L1-L3 15 234 - -
Eupl14g01098 242 SUPERFAMILY Cysteine proteinases 13 236 IPR038765 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01098 K05609 ubiquitin carboxyl-terminal hydrolase L3 [EC:3.4.19.12]