AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01099 | ATGTCTGTAGTGGATGGTTGGTCACCACCCACAATGGAAGTAGGAGATAAAACCATTCTTAAACCTAAAAACGACTGGACCAAAGAGGACATAGATTGTTGTTGTCTTAATAGCAAAGGGCTAAATGCTATTTTTAATGCAGTTGGTAAGAATGAGTTTAGAAGAATCTCTACTTGTTCATTGGCTAAAGAAGCATGGGACATTCTTAGAGTCACACATGAAGGAACGTCAGCTGTTAAGATCTGCAAACTTCAAATGTTGACTTCTAAGTTCGAATCCATGAGAATGGAGGAGAATGATAATTTTACTGAGTTCTATGCCCAACTTAGTGATATTGTGAACTCTACACACAACTTGGGTGAGGTCATTCCTAAATCCAAAGTTGTTCAAAAAATTTTGAGATCTTTACCTGATAGATTTCAGGCTAAGGTCACTACTATTGAGGAGAGCAAATATGTTGACTCTCTCAAAGTTGATGAGCTGGTTGGGTCTCTACAAACTTACGAGATGAATTTGAGACAACCGAAGAAATCAAAAGGTATTGCCCTTAAAGTTTCTGAAGCTCAAGATTCTGAGCTGGATGTTGACTATGAAGTCGAAATGGCATTATTTGTGAAAAAATTCAAAAGTTTTTTTGTTCTAAAAATGATAAAGTTAAGAACAATAAAACTTTTGATAAATCTAAGGAGCATGCCAGACCTCATGAGAGAGAAGAACCCCTGGTTCAATGGACTCAATCTCGCCCAAAGTGAGGTGGTCGACTCAGTGGTTCACGGCACTCAGAGCGGGGTGAATCATCCAGAGGACCTAGAAGAGCTCGTTCCCGGGGTCGTTCCAATCATACCGATATTCCTTCGTCCCTCCATTGCTGGTTTGACCAGCACACCAGCACCTGCAGGTGATCTTCAAACCCGTGGAGCACATCAGCAACCACAAACGTTGCTGCCTCCTCTGCCATCTCACAGGAAGAACCTCACCATCCTTGCTGCCCAGCTGGAAATCTGCTAG | 1008 | 41.77 | MSVVDGWSPPTMEVGDKTILKPKNDWTKEDIDCCCLNSKGLNAIFNAVGKNEFRRISTCSLAKEAWDILRVTHEGTSAVKICKLQMLTSKFESMRMEENDNFTEFYAQLSDIVNSTHNLGEVIPKSKVVQKILRSLPDRFQAKVTTIEESKYVDSLKVDELVGSLQTYEMNLRQPKKSKGIALKVSEAQDSELDVDYEVEMALFVKKFKSFFVLKMIKLRTIKLLINLRSMPDLMREKNPWFNGLNLAQSEVVDSVVHGTQSGVNHPEDLEELVPGVVPIIPIFLRPSIAGLTSTPAPAGDLQTRGAHQQPQTLLPPLPSHRKNLTILAAQLEIC | 335 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01099 | 335 | MobiDBLite | consensus disorder prediction | 296 | 318 | - | - | |
| Eupl14g01099 | 335 | Pfam | gag-polypeptide of LTR copia-type | 38 | 171 | - | - | |
| Eupl14g01099 | 335 | MobiDBLite | consensus disorder prediction | 297 | 318 | - | - | |
| Eupl14g01099 | 335 | PANTHER | DUF4219 DOMAIN-CONTAINING PROTEIN-RELATED | 17 | 186 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01099 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr14:20408876 | Eupl4g01779 | Eupl-Chr4:36736213 | dispersed | |
| Eupl | Eupl-Chr12:31353770 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr13:14571560 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr13:25062097 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr3:75892 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr3:16044854 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr4:28959978 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr6:35483368 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr8:15030245 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr9:948359 | Eupl14g01099 | Eupl-Chr14:20408876 | transposed | |
| Eupl | Eupl-Chr12:9497499 | Eupl14g01099 | Eupl-Chr14:20408876 | wgd | |
| Eupl | Eupl-Chr14:20408876 | Eupl14g01266 | Eupl-Chr14:28435805 | wgd |