AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01106 | ATGAAGGTGGTGGTGGAATTCCAAGAAGAAGGTTTCCTAGATTTCCCATCAAATAGCACTTTCATAGCCTTGATTCCGAAGACCACGGGGGCGGAGGACATTTCGGATTACAGGCCCATTAGTTTGGTGGGCAGTGTCTACAAAATTATAGCAAAGTTGCTGGCCTTAAGATTTAGAGAGGTTCTATCTTCGGTCATATCGGCTAACCAAGGAGCTTTTGTGAGAGGAAGACAGGTTCTTGATGGGGTTCTCATTGCCAACGAATGTATTGACTCGAGAATGAAGTCTAGTAACGCCGGACTCGTATGCAAGATCGACATGGAGAAGGCCTACGATCACGTTAACTGGGCTTTCTTGGATTACTTATTGAGCAGAATGGGATTTGGGGGCAAATGGAGGAAGTGGATATGGAGATGCATCTCTTCGGCCTCCTTTTCTATCCTCGTCAATGGCTCCCCTGCGGGTTACTTTAAAAGCTCAAGAGGTTTGCGACAAGGTGATTCCCTCTCCCCATTTTTGTTCATTGTGGTGACGGAAGCCCTAAGTAGACTGATATCTAAAGCTGTGGCTTTGGAGAGCTAG | 582 | 46.39 | MKVVVEFQEEGFLDFPSNSTFIALIPKTTGAEDISDYRPISLVGSVYKIIAKLLALRFREVLSSVISANQGAFVRGRQVLDGVLIANECIDSRMKSSNAGLVCKIDMEKAYDHVNWAFLDYLLSRMGFGGKWRKWIWRCISSASFSILVNGSPAGYFKSSRGLRQGDSLSPFLFIVVTEALSRLISKAVALES | 193 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01106 | 193 | PANTHER | NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED | 2 | 189 | IPR052343 | - | |
| Eupl14g01106 | 193 | SUPERFAMILY | DNA-RNA polymerases | 23 | 183 | IPR043502 | - | |
| Eupl14g01106 | 193 | ProSiteProfiles | Reverse transcriptase (RT) catalytic domain profile. | 6 | 193 | IPR000477 | - | |
| Eupl14g01106 | 193 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 25 | 188 | IPR000477 | - | |
| Eupl14g01106 | 193 | CDD | RT-nLTR-like | 20 | 193 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01106 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr14:20712626 | Eupl8g00929 | Eupl-Chr8:26316308 | dispersed | |
| Eupl | Eupl-Chr10:18035358 | Eupl14g01106 | Eupl-Chr14:20712626 | transposed | |
| Eupl | Eupl-Chr13:20148456 | Eupl14g01106 | Eupl-Chr14:20712626 | transposed | |
| Eupl | Eupl-Chr2:30552097 | Eupl14g01106 | Eupl-Chr14:20712626 | transposed | |
| Eupl | Eupl-Chr3:15748075 | Eupl14g01106 | Eupl-Chr14:20712626 | transposed | |
| Eupl | Eupl-Chr8:6262237 | Eupl14g01106 | Eupl-Chr14:20712626 | transposed | |
| Eupl | Eupl-Chr8:13323847 | Eupl14g01106 | Eupl-Chr14:20712626 | transposed | |
| Eupl | Eupl-Chr12:8448202 | Eupl14g01106 | Eupl-Chr14:20712626 | wgd |