AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01123 ATGGGGGCTTCGGCTAACGAGCTAGATAGAAGTGTTTTGTGGAAGAAAGCTCGTCAAAATAAAAAAGGAGAGTACGTGAATGATGTCGTTAGAGAAACGGCTGAAAAAATTGATGGGTTGACAAAGAAAGTCGAGGAAGGAAGCATGGTCAGTGATGGTTCTAATGATATTCTTACAATGGCATTAGGGACACCTGAACACTCTGGCCGTGTTAGGGGTTTAGGGCATCATGTTACTCCAACAGTCTATTTCCATCTCCCAAGACGTGGAAGTTCAAAATATGTAGTTGCTTTGGAAAATAGGACTAAATTTTTGGAGGATGAATTGAGCAAAAACAAAGACGAAATGAAACACATGCAGGCCCAAGTCAATGCGATCATGCAACAACAGGCCTCCAATACTATGCCGACAAATGAACACGCCACGTCTAAACATAGTAGTAATAGAAATCAAAAGTCAAAGAACACGTCACCTTCGAATCCTAACTCTAGAATTGGGAAAAGCAAGCCATGTAAGTTAGCGTTGGGTTCCAAAACCAACGTTATCGCTCGTGGCTTCGTATTTGAGAGAGTTACGCCAGCGGAAACAGTACATAACATTTTGTTGGGAGAAGGAGAAGTACGTGTTGCGGTGGAGTATGCACTATCTCCAGAAGCCCTTCTCCCTATACCAGTGGCAGATGAAATGAAATTTGTGAAAGATGCAATTGGGTCTCACGTGGCTTGGCCTATTGAGTTTGTCCTAACAGGCATTGAGGAACAGGAGGATCAAGTTCATAAAAAGAACCCCGACCCCATTCAAGTTTTTGGTGAATTCATTAAAACAAGATGTTCAAATAATGAAAACCTTATCATTCTTATTAAGACTTCTGTATTTGGCTCTGAGATCGAGACTCACATTGACAAAGTCGATGTCGATGCATTATATAAAATGAAAGAATTGTCAGCTCCTATTGTTATGGTGTACATAAGCCACATTTATAATATTTTGGTTTCTCAAGGCGTACAAGATAAGTATGGATTTGTCAATCCCGTTTCCATCAGTTCAGCAAGGGGACGGGGAATTTCAAATACTATCACAACAAGACTAAAGGATACGAAGAAAAATCAGATATTTTTCATCCCATACAATATTGGATTCCATTGGATTTTAATTGTCATCGATTTATCAATGATGGACGTATACTGGTTGGATCCACTAAGAAATCCTCCCGATGACACCATTAAATACCATGTAAACATTGCCCTGAGAACATATCAATCTTCGAAAGGAAAAAGAGGGCCAAATCCATCTTGGAATGACATAAAGTTTCTTGGACGAAACACATACACGCAAGATGAAATTGATGAAATTAGAATTGAGCTAATGGAATTCATCCCAACTTTAAGAATCCAGGCTTTGACTTCTCACAATCCGATTGACAATCTTGGTATGCTTCAGCAATTCCTGTTAGCTTCATCTGTTCTTGGCCTTTCTCTAGTAAATAGAGCAGTGTAA 1497 39.55 MGASANELDRSVLWKKARQNKKGEYVNDVVRETAEKIDGLTKKVEEGSMVSDGSNDILTMALGTPEHSGRVRGLGHHVTPTVYFHLPRRGSSKYVVALENRTKFLEDELSKNKDEMKHMQAQVNAIMQQQASNTMPTNEHATSKHSSNRNQKSKNTSPSNPNSRIGKSKPCKLALGSKTNVIARGFVFERVTPAETVHNILLGEGEVRVAVEYALSPEALLPIPVADEMKFVKDAIGSHVAWPIEFVLTGIEEQEDQVHKKNPDPIQVFGEFIKTRCSNNENLIILIKTSVFGSEIETHIDKVDVDALYKMKELSAPIVMVYISHIYNILVSQGVQDKYGFVNPVSISSARGRGISNTITTRLKDTKKNQIFFIPYNIGFHWILIVIDLSMMDVYWLDPLRNPPDDTIKYHVNIALRTYQSSKGKRGPNPSWNDIKFLGRNTYTQDEIDEIRIELMEFIPTLRIQALTSHNPIDNLGMLQQFLLASSVLGLSLVNRAV 498
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01123 498 Coils Coil 95 129 - -
Eupl14g01123 498 PANTHER OS10G0338966 PROTEIN-RELATED 5 246 - -
Eupl14g01123 498 MobiDBLite consensus disorder prediction 131 166 - -
Eupl14g01123 498 MobiDBLite consensus disorder prediction 131 170 - -
Eupl14g01123 498 Gene3D Adenoviral Proteinase; Chain A 272 456 - -
Eupl14g01123 498 Pfam Ulp1 protease family, C-terminal catalytic domain 362 411 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Eupl14g01123 498 SUPERFAMILY Cysteine proteinases 297 462 IPR038765 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01123 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:5401180 Eupl14g01123 Eupl-Chr14:21455215 dispersed
Eupl Eupl-Chr11:24314285 Eupl14g01123 Eupl-Chr14:21455215 dispersed
Eupl Eupl-Chr13:31143347 Eupl14g01123 Eupl-Chr14:21455215 dispersed
Eupl Eupl-Chr14:21455215 Eupl8g00313 Eupl-Chr8:5060466 dispersed
Eupl Eupl-Chr14:21455215 Eupl11g01733 Eupl-Chr11:36404450 transposed