AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01127 ATGGCTGAAGAAGAAGAAGTGCTTATCGAAGTCGAAGCTGTTCAAGCCGTTTACGGCGACGATTGCCTGGTCATCGAACGTTTCCCACCTCATCTCCATGTCCACATAAAGCCTCGAACAGCCGACGATTCATCACAACAGTTTGTGGAAGCTGTTCTTGGACTACAAGCAGGTCCGCAGTATCCCAAGGAACCACCTCGTATCGATATTGTAGAATCCAAGGGTCTTGATGAGAGACGACAAGCATATCTGATAACAAGCATACAAGAGAAAGCCCGTGAACTCTCCTCATTTCTAATGCTTGTAGCACTTTGTGAGGAAGCGGTGGAGATGCTCTCTGACATGAACCATCCTGATGGAAATTGTCCGTTGTGTTTGTATCCCCTGGTTAAAGAAGATATGCCAAGTGAGATATTGCCATTTATGAAGCTGATGTCATGTTTTCACTGCTTTCACAGCGAATGCATTATTAGGTGGTGGAAGTGGCTCCAAGAGCAAAATGAAACCAACATGGGTAATTTGTCTCATGCAACTGTGCCTCCTTCCAGCGATCTAGAAAATTGGCAAGATTTGCATGGAACCAAGAAGAAGAATCTGGGGAACTGTCCTGTCTGTCGCAAGGTTTTTCATGTCAAAGATATTGAACATGTCCTTGACTTGGTTGGAATCCATTCATCTCAACAGAGTTTCGAGGGAACTGAAACCAAAGATGACGAGTTCATGCGTTCCGAAGCTGAAAATATCAGAAGACAGAAATTTGAAGCCTTGTTAAAATTACAGGAGGAGAATAGTGGTCTCATTGAAACCAAAAGAAACGAAGTCTTGTTGCCAGGAATGTTTCTTCCTGAACCCATCACACTACCTACTGTATCCACGGAAGCTACTGTTGAGCTACAACACAGTAACTCAACCTGCACGCCCACCTCAGAAACGGGTTCAAGCAGATCTTCGAACAAGCCTAGCACCAGTGAGCACAAGGACTTAGGCATGAGGAAGAACAGAATTCAGAATTCAAGACAACAGAAAAAGCAGTGGATTAAGAAAGAGAACAGTAGTACAGGGTAA 1065 44.13 MAEEEEVLIEVEAVQAVYGDDCLVIERFPPHLHVHIKPRTADDSSQQFVEAVLGLQAGPQYPKEPPRIDIVESKGLDERRQAYLITSIQEKARELSSFLMLVALCEEAVEMLSDMNHPDGNCPLCLYPLVKEDMPSEILPFMKLMSCFHCFHSECIIRWWKWLQEQNETNMGNLSHATVPPSSDLENWQDLHGTKKKNLGNCPVCRKVFHVKDIEHVLDLVGIHSSQQSFEGTETKDDEFMRSEAENIRRQKFEALLKLQEENSGLIETKRNEVLLPGMFLPEPITLPTVSTEATVELQHSNSTCTPTSETGSSRSSNKPSTSEHKDLGMRKNRIQNSRQQKKQWIKKENSSTG 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01127 354 Gene3D Ubiquitin Conjugating Enzyme 2 117 IPR016135 -
Eupl14g01127 354 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 118 220 IPR013083 -
Eupl14g01127 354 SMART RWD2001b 9 115 IPR006575 GO:0005515(InterPro)
Eupl14g01127 354 PANTHER RING FINGER PROTEIN 25 2 341 IPR039133 GO:0005634(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Eupl14g01127 354 MobiDBLite consensus disorder prediction 299 354 - -
Eupl14g01127 354 MobiDBLite consensus disorder prediction 299 319 - -
Eupl14g01127 354 SMART ring-2 122 205 IPR001841 -
Eupl14g01127 354 SUPERFAMILY RING-U-box 112 164 - -
Eupl14g01127 354 FunFam RWD domain-containing protein 1 117 - -
Eupl14g01127 354 ProSiteProfiles RWD domain profile. 9 115 IPR006575 GO:0005515(InterPro)
Eupl14g01127 354 Pfam RWD domain 7 111 IPR006575 GO:0005515(InterPro)
Eupl14g01127 354 FunFam RWD domain-containing protein 118 221 - -
Eupl14g01127 354 ProSiteProfiles Zinc finger RING-type profile. 122 206 IPR001841 -
Eupl14g01127 354 SUPERFAMILY UBC-like 4 112 IPR016135 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01127 K10640 E3 ubiquitin-protein ligase RNF25 [EC:2.3.2.27]