AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01129 | ATGGCCATGCTCGCCTTTCCCTTAGCTCTAACCCTTCTAAAGTCCCATGGAGCTCACTTTTCACTTCTCTACGCCGGAAAGCGAAACCCTAGCCAGCTCTATAATCCTCTAAATCGTTGCCGTTCATCGCTTCGGTTCAACAAAACCAGTGTTTCGTCAATCAGTACTACTTCTGTGATATCTGAAGCTTCATCGAACGATCCAAAATCTCCGACCAGAGCTTCTGTCCCTACCTTTCAACAGGCGATTCAGCGTCTCCAGGAGTATTGGGCTTCTGTTGGATGCGCTATAATGCAATGTAGCAACACAGAGGTTGGAGCTGGAACTATGAATCCTTTGACGTTCTTGAGAGTTTTGGGTCCAGAACCATGGAATGTTGCGTATGTGGAACCTAGTATACGGCCAGATGATAGTCGTTATGGGGAAAACCCAAATAGGCTCCAACGCCACACTCAATTTCAGGTTATATTAAAGCCAGATCCGGGAAATTCACAAGACCTTTTTATCCAGAGTCTTTCAGCCTTAGGTATTGATGTCAATGAACATGATATACGCTTTGTGGAGGACAACTGGGAAAGTCCGGTTCTTGGTGCATGGGGATTGGGCTGGGAAATTTGGATGGATGGTATGGAGATAACACAATTTACCTACTTCCAGCAGGCTGGAAGTATTCAATTGCTACCAATATCTGTGGAGATAACTTATGGCCTTGAACGTATTCTCATGTTGCTTCAGGGGGTTGATCATTTCAAGAAAATTCAATATGCTGACGGAATTACATATGGAGAGCTGTTTTTGGAGAGCGAGAAGGAAATGAGTGCATATTATTTAGAACATGCCAGTGTTAATCATATTCAGAAACACTTCGAATTGTTTGAGGAAGAAGCTCGCTCCTTGCTATCACTGGGTCTTGCCATCCCTGCGTATGATCAGCTTCTGAAGACGTCTCATGCTTTTAACATTTTAGACTCCAGAGGCTTTGTTGGTGTAACTGAACGGGCTCGCTATTTTGGCCGGATGCGTAGTTTAGCCCGCCAATGTGCACAACTTTGGGTGAAGACACGAGAGTCTCTTGGGCATCCATTGGGCATTCTTTCTGAGCCCAATCATATGATTTATCCCCAAGAGATTATTGAAACGGCAACGAGAAAGGTGCTAAAGGATCCTAGGACATTTGTTCTTGAAATTGGAACAGAAGAGGTGCCTCCTCAGGATGTAGTTGATGCAAGCCAGCAGCTTAAAGCTTTAATCATGCAGGTGCTAGAAAAACAAAGATTGAGCCATGAAGAAATGTTCGCCTTTGGTACACCTCGCAGACTAGTGGTTTGTGTTGAGGGACTTTGTTCTAAGCAAGCTGAGAATGAGGTTGAAGTACGGGGACCACCAGTGGCGAAGGCATATGACCTCCAAGGAAATCCCACTAAGGCTGCTGAGGGTTTTTGCCGTAAATATGGTGTACCCCTGGACTCGGTGTTTAAAAAGGCTGATGGGAAGATAGAGTACATTTATATTCGAGTGAAGGAGTCCGCACGACTTGCTTTAGAGGTTCTGGCTGAAGATTTGCCTGGAATCATTGCTAAAATCTCGTTCCCAAAGTCTATGCGTTGGAGTTCTCAGGTCATGTTTAGTAGGCCTATTCGTTGGATTTTGGCCCTCCACGGAGATGTTGTTGTGCCCTTCACGTTTGCGGGAGTTTTCAGTGGGAACCTATCTTACGGTCTTCGTAATACTCCTTCAGCTACTGTCCAGGTAGAAAGTGCAGAGGCTTATGTAGGTGAAATGAGGAAAGCAGGAATATCAATTGACATTGAGGAGCGCAAGAAAACAATTTTAGAGCACTCCAATGCTTTAGCAGAAAGTGTTGGTGGGCATCTTATTATGCAAAATAGCTTACTTGATGAGGTTGTGAATCTTGTTGAGGCACCCATTCCAATACTTGGAAAGTTTAAAGAATCCTTCTTAGAGCTCCCTAAAGATTTATTAATAATGGTTATGCAGAAGCACCAGAAGTATTTTTCCATGACCGACAGTAATGGGAGGCTATTGCCGTATTTCATAGCTGTGGCAAATGGAGCCATCAATGAGATGGTAGTAAGAAAAGGGAATGAAGCTGTACTCAGAGCTCGCTACGAGGATGCCAAGTTTTTCTATGCGATGGACACACGTAAAAAACTTTCTGAATTCCGAAGTCAACTAGAAGGGATTCTTTTCCATGAGAAGCTAGGAACAATGCTGGACAAGATGATGCGCGTCCAAAGTACTGTTACTAAATTAAGCTTGGCCATGGGAATAGAAGATAAGCTCTCAATTGTTCAAGATGCTGCATCACTAGCTATGTCGGATCTTGCTACTGCTGTTGTTACAGAATTTACTTCCCTCTCTGGAATAATGGCACGCCATTATGCATTGAGGGATGGTTATTCAGAACAGATTGCAGAAGCCTTGTTTGAGATCACACTTCCTAGATTTTCTGGAGATATACTTCCAAAAACTGATGCAGGGATAGTCTTGGCAATTGCTGACAGACTAGATAGTCTTGTTGGCTTATTTGGAGTTGGTTGTCAGCCAAGTTCCTCTAATGACCCTTTTGGCCTGCGAAGAATCTCTTACGGTCTTGTTCAAGTGTTGGTGGAAAATGAAAAGAACTTGGATATAAGAAATGCTCTGAGACTTGCTGCAGAAGTTCAACCCATACGAGTAGATACAAGTACTATAGATGATGTACATCAATTTGTTACACGGAGACTCGAGCAATTTCTGGTGGATAAGGGTATAAGTCCTGAGGTGGTTCGGTCTATCCTTTTAGAGCGTGCAAATTGGCCATGTCTGGCTACAAAATCGGCTGCGAAAATGGAGGCTTTGTCAAGAGGTGAGCTTCTACCAAAGGTTGTTGAAGCATATTCTCGGCCAACAAGAATTATCCGTGGGAAGGATGTGGATGCTGATCTTGAGGTAAGTGAGGCTGCATTTGAAACAAATGAAGAGAGAGCTTTATGGAGTGCTTTTTTGGCAGTGAAGAGCAAAATTCACCCTGGTGTTGAGGTAGATGATTTTGTCGAAACATCATCGCAGCTACTACAACCACTCGAGGATTTCTTTAACCACGTCTTTGTCATGGTGGAGGATGAAAGAGTTAGGAAGAACAGGCTTGCACTACTCAAGAAAATTGCAGACCTTCCCAAAGGAATAGCGGACCTCTCAGTTTTGCCCGGATTTTAG | 3219 | 43.74 | MAMLAFPLALTLLKSHGAHFSLLYAGKRNPSQLYNPLNRCRSSLRFNKTSVSSISTTSVISEASSNDPKSPTRASVPTFQQAIQRLQEYWASVGCAIMQCSNTEVGAGTMNPLTFLRVLGPEPWNVAYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIQSLSALGIDVNEHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSIQLLPISVEITYGLERILMLLQGVDHFKKIQYADGITYGELFLESEKEMSAYYLEHASVNHIQKHFELFEEEARSLLSLGLAIPAYDQLLKTSHAFNILDSRGFVGVTERARYFGRMRSLARQCAQLWVKTRESLGHPLGILSEPNHMIYPQEIIETATRKVLKDPRTFVLEIGTEEVPPQDVVDASQQLKALIMQVLEKQRLSHEEMFAFGTPRRLVVCVEGLCSKQAENEVEVRGPPVAKAYDLQGNPTKAAEGFCRKYGVPLDSVFKKADGKIEYIYIRVKESARLALEVLAEDLPGIIAKISFPKSMRWSSQVMFSRPIRWILALHGDVVVPFTFAGVFSGNLSYGLRNTPSATVQVESAEAYVGEMRKAGISIDIEERKKTILEHSNALAESVGGHLIMQNSLLDEVVNLVEAPIPILGKFKESFLELPKDLLIMVMQKHQKYFSMTDSNGRLLPYFIAVANGAINEMVVRKGNEAVLRARYEDAKFFYAMDTRKKLSEFRSQLEGILFHEKLGTMLDKMMRVQSTVTKLSLAMGIEDKLSIVQDAASLAMSDLATAVVTEFTSLSGIMARHYALRDGYSEQIAEALFEITLPRFSGDILPKTDAGIVLAIADRLDSLVGLFGVGCQPSSSNDPFGLRRISYGLVQVLVENEKNLDIRNALRLAAEVQPIRVDTSTIDDVHQFVTRRLEQFLVDKGISPEVVRSILLERANWPCLATKSAAKMEALSRGELLPKVVEAYSRPTRIIRGKDVDADLEVSEAAFETNEERALWSAFLAVKSKIHPGVEVDDFVETSSQLLQPLEDFFNHVFVMVEDERVRKNRLALLKKIADLPKGIADLSVLPGF | 1072 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01129 | 1072 | SUPERFAMILY | Class II aaRS and biotin synthetases | 78 | 357 | IPR045864 | - | |
| Eupl14g01129 | 1072 | Hamap | Glycine--tRNA ligase beta subunit [glyS]. | 389 | 1069 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | Gene3D | Bira Bifunctional Protein; Domain 2 | 65 | 280 | IPR045864 | - | |
| Eupl14g01129 | 1072 | PANTHER | GLYCYL-TRNA SYNTHETASE | 78 | 1072 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0005739(PANTHER)|GO:0006426(InterPro)|GO:0009570(PANTHER) | |
| Eupl14g01129 | 1072 | NCBIfam | glycine--tRNA ligase subunit alpha | 78 | 362 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | Gene3D | Class II aaRS and biotin synthetases; domain 2 | 281 | 360 | - | - | |
| Eupl14g01129 | 1072 | Hamap | Glycine--tRNA ligase alpha subunit [glyQ]. | 77 | 357 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | Pfam | Glycyl-tRNA synthetase alpha subunit | 79 | 356 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 78 | 352 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | CDD | GlyRS-alpha-core | 78 | 356 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | ProSiteProfiles | Heterodimeric glycyl-transfer RNA synthetases family profile. | 746 | 1034 | IPR006194 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | FunFam | Glycine--tRNA ligase, chloroplastic-mitochondrial 2 | 281 | 360 | - | - | |
| Eupl14g01129 | 1072 | FunFam | Glycine--tRNA ligase alpha subunit | 71 | 280 | - | - | |
| Eupl14g01129 | 1072 | NCBIfam | glycine--tRNA ligase subunit beta | 391 | 1069 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | Pfam | DALR anticodon binding domain | 965 | 1057 | IPR008909 | GO:0004814(InterPro)|GO:0005524(InterPro)|GO:0006420(InterPro) | |
| Eupl14g01129 | 1072 | Pfam | Glycyl-tRNA synthetase beta subunit | 392 | 934 | IPR015944 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | SUPERFAMILY | HD-domain-PDEase-like | 719 | 851 | - | - | |
| Eupl14g01129 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 183 | 207 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 209 | 229 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 317 | 333 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 131 | 146 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 232 | 247 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) | |
| Eupl14g01129 | 1072 | PRINTS | Glycyl-tRNA synthetase alpha subunit signature | 152 | 172 | IPR002310 | GO:0000166(InterPro)|GO:0004820(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006426(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01129 | K14164 | glycyl-tRNA synthetase [EC:6.1.1.14] | ||||
| Eupl14g01129 | K01879 | glycyl-tRNA synthetase beta chain [EC:6.1.1.14] |