AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01131 ATGAATCCAGAGTATGACTATCTGTTCAAGCTTTTGCTCATTGGAGATTCTGGTGTTGGAAAGTCATGTCTCCTTCTGAGATTTGCCGATGACTCATATCTGGAGAGTTACATCAGCACCATTGGAGTTGACTTTAAAATCCGCACTGTGGAGCAGGATGGGAAGACCATTAAACTGCAGATTTGGGACACAGCTGGACAAGAACGTTTCAGGACAATCACTAGCAGCTATTACCGTGGTGCACATGGCATTATAGTAGTTTATGATGTGACAGACCAGGAGAGCTTCAACAACGTCAAGCAATGGTTGAACGAAATTGACCGCTATGCTAGTGAGAATGTCAACAAGCTTCTGGTTGGAAACAAGTGTGACCTCACGGCAAATAAAGTGGTGTCTTACGAGACAGGAAAGGCATTTGCCGACGAAATTGGGATCCCATTCATGGAAACAAGTGCAAAAAATGCTACTAATGTGGAACAAGCCTTCATGGCCATGGCTGCTGAGATCAAGAACAGGTACTTTTTTTTGTCTGGTTTTTATGTTGGACGACTAATACTAGATAAAGAGGAAACCTGGAATATGTACTTTGTGAGCTTGCGAAGAAAAAGTACACAAGTTTTAATTCTTGTGGATGGTAAGAAAAGGTTGTATGGATCCCACCTGTTCTGGGCCTTGTTCAAACAATGTGTGGTGTGGTTCTGGATAGTTTCTTGTTAA 717 42.26 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETGKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRYFFLSGFYVGRLILDKEETWNMYFVSLRRKSTQVLILVDGKKRLYGSHLFWALFKQCVVWFWIVSC 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01131 238 PRINTS Transforming protein P21 ras signature 147 169 - -
Eupl14g01131 238 PRINTS Transforming protein P21 ras signature 112 125 - -
Eupl14g01131 238 PRINTS Transforming protein P21 ras signature 9 30 - -
Eupl14g01131 238 PRINTS Transforming protein P21 ras signature 50 72 - -
Eupl14g01131 238 PRINTS Transforming protein P21 ras signature 32 48 - -
Eupl14g01131 238 SMART rab-sub-5 9 172 - -
Eupl14g01131 238 SMART ras-sub-4 6 172 - -
Eupl14g01131 238 ProSiteProfiles small GTPase Rab1 family profile. 4 229 - -
Eupl14g01131 238 SMART arf-sub-2 1 173 - -
Eupl14g01131 238 Gene3D - 2 174 IPR027417 -
Eupl14g01131 238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 181 IPR027417 -
Eupl14g01131 238 CDD Rab1-Ypt1 7 172 - -
Eupl14g01131 238 SMART ran-sub-2 14 215 - -
Eupl14g01131 238 ProSiteProfiles small GTPase Rho family profile. 2 173 - -
Eupl14g01131 238 FunFam Small GTP-binding protein 2 177 - -
Eupl14g01131 238 ProSiteProfiles small GTPase Arf family profile. 2 238 - -
Eupl14g01131 238 PANTHER RAS-RELATED PROTEIN RAB 7 171 IPR050227 GO:0016192(PANTHER)
Eupl14g01131 238 Pfam Ras family 10 170 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01131 238 ProSiteProfiles small GTPase Ras family profile. 1 231 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01131 238 SMART rho-sub-3 11 171 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01131 238 NCBIfam small GTP-binding protein domain 7 163 IPR005225 GO:0005525(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01131 K07874 Ras-related protein Rab-1A
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:22191612 Eupl9g00329 Eupl-Chr9:9352700 dispersed
Eupl Eupl-Chr14:22191612 Eupl8g00842 Eupl-Chr8:24037441 wgd