AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01138 ATGCATGGGGGGGTTACAAGATTGAAACAACATATTATTGCGCGCCCAGGAGATATAACAGCTTGTCCTAAAGCTCCTAGGGAAGTAAGATTGTTAATCACAAACCATTTGCAGTTAACCAAACAGATGAAGGCTACTGAGCAAAGAAGAAGAGATCAAATACAAGAAAGATTAAATGAGTTGGGTAGTAGTGGTGGTGGAAGAGAAGAAGCTGAGGAAGAGGAAAATGAAGAGAATATTGATATTCCTGCTGAAGTGGAAGATCAATATCGTCCATATTGGGAAATAGACGAAGAAGAAGCTTTAAGACGGGCCATACGTGAAAGCAGACGAGAGGCCGATGAACAAGCTCAAAGAAGACACTCTGTATCTAGGGGGGCAAGTTCGTCTGGTATACACATCGGTAGAGGGGGGATTCCTCGTAGTGCAAGTGTGCGTGGTGGTACTGATATTAGAGATATGATGCGTCGTAGTACCAGTGTACACGAGCCTTCTACTCGATCACGAAGAACAGATAAAGATGTTGATGCCGCAACCAAAGCTCCTACGGGAGGAATTGACCCTTACTTATATAAGTCTGCAGGAGGAAGACAAAAAAAGTTGAAGGAAGCATGGGGTGGAAAACAAGTCGTGCATAAAGTGGGAAAAGTAATTTCAAAATTTTTTATGTTCAGCTCAATTCCCTTCAATGCAGCAAAGAGTCCTTACTTTCAAACCATGATTGACACCATTGGTGAAGCGGGACCCGTAAAGGGACCAACCCCATATCAGCTGGCAAACAAGTATTTAAAAGAAGAGGTGGCGGAGCTAAATCAATATATAAATGGCAAAAAGAAGAAATGGACAGAATTTGGATGCACATTGATGTGCGATGGCTGGACTTCCAAAACTAGGAAGTCTATCATTAATTTTATGGTCTACTGTGATAAAGACATGATATTTCTCAAGTCTGTAGACACATCTGGAAAAGAGAAAACATCGAGTTACATTCTCGAGTTAATGGATAAGATGATCGAGGAGGTGGGAGAAGAGAATGTTATCCAGATTGTGACGGATAACGAAGCGTCATTTAAGCGTGCAGGGCTAGAGTTGATGAAAAAAAGCACAAAGTTAGTAAACTTGATGAAGACATTCACTGACAATAAAGACTTGTTACGTCCTGGTATCACTAGATTCGCAACAGAATTTATTTCTCTTGAAAGTCTTATCCGATATCAGGATGCACTGAGACAAATGTTTATATCAGATGAGTGGAAAGAGCTTGTTAGACATACGTACAGCAAAGATAAAAAAAAGAAGGAACAAGCTAGGGATGTCTCAAAGTTAATTCTAAATGATGAATTTTGGGGTAACGTTGAAGAGGTATGCAAAATTATGGGACCACTTGTCAAGGTTCTAAAAATTGTGGATCAAGACAAGAAACCTACTTTGGGTGTAATATTTGAAGCGATGAAAAGAGCCAAAGAGGTGATTAGTGCTCAAGTCCGTCATCATCAACGTTACTTTGAAATCATTGACAGAAGATGGGAGACACAACTTCATCAAGATCTCCATGCAGCAGCGTATTTTTTAAATCCAAAATTTCGATATGACGAAGACTTTTCCCATCACCAAGATATAAGGACAAGTTTAAAAAATGTCATAAAAAGACTTGAACCGGATATGGATAGTGCAGGAGAAGCAATTGATCAGATAAGACTTTATGAAGAAGGAAGGGGAGAATTTGGCGATCCACTCACTCAGAAAAAAGCAAAGTTTAGTCTACCAACTGAATGGTGGTACAATTATGGTGAGTCTGCTCCTGCCTTACGAAAGATTGCGATTAAAGTATTAAGCCAAACATGTTCATCATCAGGCTGTGAAAGAAATTGGAGCACCTTCTCCCTCATCCATTCAAAGCCACGGAATAGATTATCAATGATGAGGTTGGAGAATCTGGTATACGTCCACTATAATATGCGACTTCGGGTTTGTAATCTAACTGATACAAGAGATGAAGAAGATTATTATAATCCAATTGATTTGGATTATATATTTGAAAACAGCGATGTTCTTGATGAATGGTTAAGAGAAAAAGAACCCCCTGCATTTGATGGAGATGACTTGTCATGGTTAGATGAAGGTGTTCCAAGTCGCGAAGATGATTCGACACAGCATCGAAGTCGTGGTTCAAATGACGATGATGATGATGATGATGGTGGTGGTGGTGATGGTGATGGTGATGGTGGTGCTGGTGTTGGTGCTGGTGCTAGTGGTAGTGGTGGTGGTGATAGGGGAGATGGCTGGAATTGGGGCGATGGTGGTGGAGTCGGGGAGAGTGGAAGTGTTGAGGGAGGTCGTTTAGGCGACACACACCCAGATGACAATGTAATCATCACTCAAGACACTGATCATGGTGGGTGGGGACTACGAGGCCGACGTAGTAGAAGACCAACTGCCTTACCTAGACACCCAAGCAACGATGATTGGGCACAGAGAGATCATGTTGGTACTAGTAGGGGTGGCCCGAGTGAGTTTGATGCAAGACTCACCGACTTGGATGAACAAGTACATGGGATGAATATTGAGGACTATGGTGGTCAGCTTGGATATGGAGGGGATAATTATGATTATGGTCAGTCTGAAGTACATCAACCTCAGCAGCCATTTTATCCACATGGTTATGGTCAGCCTCCTCAACATCAATATGGTTATGATCAGCAGCCACATAGCTATGATTATGGCCAATCACAGTCCGACCATAGCTATAGTGGATATTATGGACTATCTGGAGGGAGCTATGACACTACAGAGCCCAACGATACTGCATCCACCCAGTATGGGTCATTTTTCTTTCCTATGAACCCCCCTGATGGTTACTATGAACAATAG 2871 41.8 MHGGVTRLKQHIIARPGDITACPKAPREVRLLITNHLQLTKQMKATEQRRRDQIQERLNELGSSGGGREEAEEEENEENIDIPAEVEDQYRPYWEIDEEEALRRAIRESRREADEQAQRRHSVSRGASSSGIHIGRGGIPRSASVRGGTDIRDMMRRSTSVHEPSTRSRRTDKDVDAATKAPTGGIDPYLYKSAGGRQKKLKEAWGGKQVVHKVGKVISKFFMFSSIPFNAAKSPYFQTMIDTIGEAGPVKGPTPYQLANKYLKEEVAELNQYINGKKKKWTEFGCTLMCDGWTSKTRKSIINFMVYCDKDMIFLKSVDTSGKEKTSSYILELMDKMIEEVGEENVIQIVTDNEASFKRAGLELMKKSTKLVNLMKTFTDNKDLLRPGITRFATEFISLESLIRYQDALRQMFISDEWKELVRHTYSKDKKKKEQARDVSKLILNDEFWGNVEEVCKIMGPLVKVLKIVDQDKKPTLGVIFEAMKRAKEVISAQVRHHQRYFEIIDRRWETQLHQDLHAAAYFLNPKFRYDEDFSHHQDIRTSLKNVIKRLEPDMDSAGEAIDQIRLYEEGRGEFGDPLTQKKAKFSLPTEWWYNYGESAPALRKIAIKVLSQTCSSSGCERNWSTFSLIHSKPRNRLSMMRLENLVYVHYNMRLRVCNLTDTRDEEDYYNPIDLDYIFENSDVLDEWLREKEPPAFDGDDLSWLDEGVPSREDDSTQHRSRGSNDDDDDDDGGGGDGDGDGGAGVGAGASGSGGGDRGDGWNWGDGGGVGESGSVEGGRLGDTHPDDNVIITQDTDHGGWGLRGRRSRRPTALPRHPSNDDWAQRDHVGTSRGGPSEFDARLTDLDEQVHGMNIEDYGGQLGYGGDNYDYGQSEVHQPQQPFYPHGYGQPPQHQYGYDQQPHSYDYGQSQSDHSYSGYYGLSGGSYDTTEPNDTASTQYGSFFFPMNPPDGYYEQ 956
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01138 956 MobiDBLite consensus disorder prediction 894 944 - -
Eupl14g01138 956 SUPERFAMILY Ribonuclease H-like 278 655 IPR012337 -
Eupl14g01138 956 MobiDBLite consensus disorder prediction 814 828 - -
Eupl14g01138 956 MobiDBLite consensus disorder prediction 109 181 - -
Eupl14g01138 956 Pfam hAT family C-terminal dimerisation region 582 653 IPR008906 GO:0046983(InterPro)
Eupl14g01138 956 MobiDBLite consensus disorder prediction 58 80 - -
Eupl14g01138 956 MobiDBLite consensus disorder prediction 696 727 - -
Eupl14g01138 956 PANTHER OSJNBA0013A04.12 PROTEIN 369 695 - -
Eupl14g01138 956 MobiDBLite consensus disorder prediction 150 177 - -
Eupl14g01138 956 MobiDBLite consensus disorder prediction 696 956 - -
Eupl14g01138 956 Coils Coil 96 119 - -
Eupl14g01138 956 Pfam Protein of unknown function (DUF 659) 253 372 IPR007021 -
Eupl14g01138 956 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 97 116 IPR003903 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01138 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:24740799 Eupl14g01138 Eupl-Chr14:22800949 dispersed
Eupl Eupl-Chr14:13480900 Eupl14g01138 Eupl-Chr14:22800949 dispersed
Eupl Eupl-Chr14:22800949 Eupl7g01693 Eupl-Chr7:38985092 dispersed
Eupl Eupl-Chr14:22800949 Eupl8g00925 Eupl-Chr8:26241940 transposed