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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01141 ATGACGGAGGCAATGATAAGGAAGAAACCGGGGATGGTGAGTGTGAAGGAGATGCCGGTCTTACAGGACGGACCGCCTCCAGGCGGTTTTCCTCCGGTCCGATACGCTCGACGCATCCCTACAAAGGGGCCTAGTGCCATTGCCATTTTCCTCACCGCCTTTGGCGCTTTCTCATGGGGCATGTACCAGGTCGGCAAGGGCAACAAGATCAGACGGGAGCTCAAAGAAGAGAAATATGCTGCTCGCAGAGCAATTCTTCCCGTGCTTCAAGCTGAAGAGGATGAAAGATTCGTTAAAGAGTGGAAGAAGTATCTGGATGAAGAGGCCAGAATAATGAAAGATGTGCCTGGATGGAAGGTTGGCGAAAGTGTTTACCATTCTGGAAGATGGATGCCCCCAGCAACTGGCGAGCTCCGACCTGATATCTGGTGA 432 52.31 MTEAMIRKKPGMVSVKEMPVLQDGPPPGGFPPVRYARRIPTKGPSAIAIFLTAFGAFSWGMYQVGKGNKIRRELKEEKYAARRAILPVLQAEEDERFVKEWKKYLDEEARIMKDVPGWKVGESVYHSGRWMPPATGELRPDIW 143
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01141 143 PANTHER NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13 1 141 IPR009346 GO:0005747(PANTHER)
Eupl14g01141 143 Pfam GRIM-19 protein 20 138 IPR009346 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01141 K11353 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:19440277 Eupl14g01141 Eupl-Chr14:23021857 wgd
Eupl Eupl-Chr14:23021857 Eupl8g00874 Eupl-Chr8:24758834 wgd