AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01146 | ATGACGTCAGCAACCGTACGGCCACCTGGATTCCGAGGTCCTAAGGTCATTCCTTTTCTGAGAGGAAATGCATGGGAGCAACCACCTCCAGATCTAACATCTTACTTGTACAAGAATCGAATTGTATACTTGGGCATGTCTCTCGTTCCTTCTGTGACAGAGTTGATCCTCGCAGAGTTTTCATACCTTCAGTATGAGGATGCTGAGAAGCCAATTTATCTATACATAAACTCCACTGGCACAACCAAGGGCGGAGAAAAGTTGGGCTATGAGACAGAGGCATTTGCAATCTATGATGTTATGAGGTATGTTAAACCACCTATTTTCACACTTTGCGTTGGTAATGCTTGGGGTGAAGCAGCCTTGCTTCTGGCTGCTGGTGCGAAAGGAAACCGTTCTGCTTTGCCATCATCAACAATCATGATAAAGCAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATATTGAACTTGCAAGAAAAGAAGTAAAAAATGTGAAAACAGAGTTGGTTAATCTCTACTCAAGACACATAGGCAAATCGCCTGAACAGATCGAGGAGGATATCAGGCGTCCAAAATATTTCAGTCCTAGTGAAGCAGTTGAATATGGTATTATTGATAAGAGAGCTCTCTTAGACATGGATCTTCTGGTACTTGGCTTCTCACTCATGGTGCTCTTACCTGCACTGTGTAGCTCCCAGGACACTTTTACGTGCTCGAGAGCGACGTATTATGGTAGCCCTGATTGCTTAGGGACTCCAAGTGGAGCATGTGGATATGGTGAATTCGGAAGAAACATCAATGGTGGAGATGTGGGGGCTGTCTCGAGGCTATACAGGAACGGCACCGGGTGTGGTGCTTGCTACCAGGTTAGGTGCAGCATACCGCAGCTCTGCACCGATAACGGGGTGAGGATTGTGGTCACCGACCACGGTGAGGGCGACAACACTGACTTCATCGTTAGCCCTCATGGCTTCACAAAATTGGCTCATCCGAACATGGCAAAAGAATTGATGGCATATGGTGTAGTCGACGTAGAGTACAGAAGGATCTCATGCCAGTATCCGGGGTACAACCTCATGTTCAAAGTCCATGAATATAGCAAGTTTCCAGACTACTTGGCCATAGTCATCTTATACCAAGCTGGTCAAAAAGACATTACAGCCGTCGAATTGTGGCAGGAGGATTGTGAGCAATGGAGGGGGATGCGCAAGGCCTACGGCGGAGTTTGGGACATGGCTAACCCCCCTCCAAAGGGGGTGCTTAACTTGAGGTTCCAACTGAGCGGAGGTGACTGGCAAAAGTGGGTACAAGTGAGAAATGTGATCCCTAGTGACTGGAAGGCAGGGGTTGCGTATGACTCAGCCATTCAGCTTTCTTAG | 1383 | 47.36 | MTSATVRPPGFRGPKVIPFLRGNAWEQPPPDLTSYLYKNRIVYLGMSLVPSVTELILAEFSYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIELARKEVKNVKTELVNLYSRHIGKSPEQIEEDIRRPKYFSPSEAVEYGIIDKRALLDMDLLVLGFSLMVLLPALCSSQDTFTCSRATYYGSPDCLGTPSGACGYGEFGRNINGGDVGAVSRLYRNGTGCGACYQVRCSIPQLCTDNGVRIVVTDHGEGDNTDFIVSPHGFTKLAHPNMAKELMAYGVVDVEYRRISCQYPGYNLMFKVHEYSKFPDYLAIVILYQAGQKDITAVELWQEDCEQWRGMRKAYGGVWDMANPPPKGVLNLRFQLSGGDWQKWVQVRNVIPSDWKAGVAYDSAIQLS | 460 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01146 | 460 | Gene3D | - | 354 | 456 | IPR036749 | - | |
| Eupl14g01146 | 460 | PRINTS | Clp protease catalytic subunit P signature | 110 | 127 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Eupl14g01146 | 460 | PRINTS | Clp protease catalytic subunit P signature | 71 | 91 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Eupl14g01146 | 460 | PRINTS | Clp protease catalytic subunit P signature | 31 | 46 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Eupl14g01146 | 460 | PRINTS | Clp protease catalytic subunit P signature | 131 | 150 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Eupl14g01146 | 460 | PRINTS | Clp protease catalytic subunit P signature | 188 | 207 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Eupl14g01146 | 460 | SUPERFAMILY | PHL pollen allergen | 359 | 455 | IPR036749 | - | |
| Eupl14g01146 | 460 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 372 | 455 | IPR007117 | - | |
| Eupl14g01146 | 460 | Pfam | Expansin C-terminal domain | 361 | 444 | IPR007117 | - | |
| Eupl14g01146 | 460 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 255 | 358 | IPR007112 | - | |
| Eupl14g01146 | 460 | Pfam | Lytic transglycolase | 276 | 348 | IPR009009 | - | |
| Eupl14g01146 | 460 | Coils | Coil | 156 | 176 | - | - | |
| Eupl14g01146 | 460 | SUPERFAMILY | Barwin-like endoglucanases | 225 | 357 | IPR036908 | - | |
| Eupl14g01146 | 460 | CDD | DPBB-EXLB-N | 240 | 353 | - | - | |
| Eupl14g01146 | 460 | PANTHER | EXPANSIN-B3 | 224 | 459 | - | - | |
| Eupl14g01146 | 460 | SUPERFAMILY | ClpP-crotonase | 26 | 208 | IPR029045 | - | |
| Eupl14g01146 | 460 | CDD | S14-ClpP-2 | 31 | 208 | IPR001907 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Eupl14g01146 | 460 | Gene3D | - | 13 | 210 | - | - | |
| Eupl14g01146 | 460 | Gene3D | - | 228 | 353 | IPR036908 | - | |
| Eupl14g01146 | 460 | FunFam | ATP-dependent Clp protease proteolytic subunit | 12 | 213 | - | - | |
| Eupl14g01146 | 460 | Pfam | Clp protease | 31 | 208 | IPR023562 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01146 | K01358 | ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] | ||||
| Eupl14g01146 | K20628 | expansin |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr14:23758397 | Eupl3g02361 | Eupl-Chr3:54856284 | dispersed | |
| Eupl | Eupl-Chr12:26697133 | Eupl14g01146 | Eupl-Chr14:23758397 | transposed | |
| Eupl | Eupl-Chr8:25462341 | Eupl14g01146 | Eupl-Chr14:23758397 | transposed | |
| Eupl | Eupl-Chr8:25468360 | Eupl14g01146 | Eupl-Chr14:23758397 | transposed | |
| Eupl | Eupl-Chr14:23758397 | Eupl8g00990 | Eupl-Chr8:27838310 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Eupl11g00899 | . | 9 | 256 | Expansin gene family | AT5G39280 | 61.847 | 3.61e-116 | 331.0 | |
| Eupl11g00898 | . | 9 | 256 | Expansin gene family | AT5G39280 | 61.446 | 5.01e-116 | 331.0 | |
| Eupl11g00786 | . | 1 | 249 | Expansin gene family | AT1G69530 | 77.912 | 5.01e-142 | 396.0 | |
| Eupl1g00061 | . | 6 | 252 | Expansin gene family | AT2G03090 | 78.138 | 1.54e-147 | 410.0 | |
| Eupl14g01146 | . | 7 | 250 | Expansin gene family | AT4G17030 | 57.317 | 2.38e-98 | 293.0 | |
| Eupl14g00967 | . | 29 | 273 | Expansin gene family | AT1G65680 | 60.558 | 2.09e-104 | 303.0 | |
| Eupl6g00927 | . | 25 | 247 | Expansin gene family | AT3G15370 | 69.955 | 1.55e-117 | 335.0 | |
| Eupl6g00909 | . | 11 | 226 | Expansin gene family | AT4G28250 | 72.603 | 1.75e-115 | 337.0 | |
| Eupl4g01985 | . | 39 | 265 | Expansin gene family | AT3G03220 | 79.295 | 3.14e-142 | 398.0 | |
| Eupl1g01403 | . | 29 | 259 | Expansin gene family | AT3G55500 | 69.264 | 6.59e-124 | 353.0 | |
| Eupl1g00065 | . | 6 | 252 | Expansin gene family | AT2G03090 | 78.138 | 1.54e-147 | 410.0 | |
| Eupl5g00096 | . | 6 | 252 | Expansin gene family | AT2G03090 | 75.304 | 1.86e-142 | 397.0 | |
| Eupl4g01104 | . | 1 | 250 | Expansin gene family | AT1G69530 | 83.2 | 1.23e-154 | 428.0 | |
| Eupl1g00892 | . | 12 | 253 | Expansin gene family | AT2G40610 | 80.723 | 1.83e-151 | 420.0 | |
| Eupl8g00990 | . | 8 | 249 | Expansin gene family | AT4G17030 | 41.245 | 1.02e-60 | 190.0 | |
| Eupl8g00905 | . | 1 | 250 | Expansin gene family | AT4G17030 | 54.98 | 4.00e-102 | 295.0 | |
| Eupl13g00748 | . | 5 | 264 | Expansin gene family | AT3G45970 | 61.154 | 6.73e-111 | 318.0 | |
| Eupl7g00429 | . | 10 | 183 | Expansin gene family | AT2G45110 | 28.177 | 1.13e-08 | 51.2 | |
| Eupl5g02344 | . | 7 | 253 | Expansin gene family | AT2G40610 | 78.346 | 1.97e-146 | 407.0 | |
| Eupl5g01836 | . | 1 | 257 | Expansin gene family | AT2G39700 | 83.333 | 1.44e-167 | 461.0 | |
| Eupl7g01778 | . | 1 | 255 | Expansin gene family | AT4G01630 | 72.549 | 1.78e-137 | 385.0 | |
| Eupl3g02361 | . | 1 | 265 | Expansin gene family | AT3G45970 | 63.019 | 4.93e-113 | 329.0 | |
| Eupl3g02260 | . | 16 | 252 | Expansin gene family | AT1G20190 | 79.325 | 3.66e-144 | 402.0 | |
| Eupl3g02500 | . | 4 | 255 | Expansin gene family | AT4G38210 | 62.451 | 6.64e-120 | 340.0 | |
| Eupl9g01136 | . | 68 | 152 | Expansin gene family | AT2G45110 | 34.783 | 2.37e-08 | 48.9 | |
| Eupl14g00003 | . | 25 | 165 | Expansin gene family | AT1G65680 | 65.306 | 2.17e-62 | 193.0 | |
| Eupl14g00002 | . | 174 | 273 | Expansin gene family | AT1G65680 | 58.0 | 1.28e-39 | 130.0 | |
| Eupl14g00001 | . | 47 | 273 | Expansin gene family | AT1G65680 | 65.502 | 1.21e-107 | 316.0 | |
| Eupl8g00782 | . | 63 | 273 | Expansin gene family | AT1G65680 | 61.574 | 4.00e-92 | 270.0 | |
| Eupl8g00828 | . | 4 | 153 | Expansin gene family | AT2G45110 | 30.769 | 8.76e-09 | 50.1 | |
| Eupl1g01792 | . | 1 | 257 | Expansin gene family | AT2G39700 | 81.154 | 7.88e-165 | 454.0 | |
| Eupl14g00647 | . | 32 | 250 | Expansin gene family | AT1G12560 | 74.091 | 2.27e-121 | 358.0 | |
| Eupl14g00966 | . | 47 | 273 | Expansin gene family | AT1G65680 | 65.502 | 3.44e-108 | 316.0 | |
| Eupl14g00965 | . | 31 | 273 | Expansin gene family | AT1G65680 | 71.02 | 1.39e-120 | 353.0 | |
| Eupl14g00963 | . | 63 | 249 | Expansin gene family | AT1G65680 | 51.515 | 3.68e-58 | 182.0 | |
| Eupl8g00763 | . | 31 | 262 | Expansin gene family | AT1G12560 | 70.815 | 2.52e-125 | 355.0 | |
| Eupl4g01889 | . | 49 | 153 | Expansin gene family | AT2G45110 | 31.034 | 5.24e-07 | 45.1 |