AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01147 ATGGGATTGCTTGGATTGATGAACTTTGTCTTTGCTTGTATGAAGATCCTTGCAAAGAATCAATGCAAATCAAAATTTCTTTGGGTCACAGGGAAGGGTGATCAGATCAGAATCTGGGAAGGTCCATGGATTGCAACTTTACCTTCGTTATCAATTTCTCAATCGCGACCTTCATCGTGTTCTCTCAGATGGGTAAAAGAGCTTATCCTTCCAAACCGAAAGTGGAATGAAGATTTGATAACCTCACTGATTGCCCCTGACATAGCCCAACACATTACCTCAATTCCTTTAAGCCACAGGGACATACCTGATCGTCTTATGTGGGCCCCACACCCCCATGGTAAATTTACATCCAAAGCAGCATATCATTTTTGGTGCCAAGACCTCACGCATTCTGGGGCACAGACCTTGCCGAAAAAGCTATGGAAGACCATCTGGCATCTCCGAATCCCGTATCGAGGAAGATTCTTTCTTTGGAAGTTCTTCCGAAATATCTTGCCTACTAAAAGTCGTATCCATGCACAGATTACTCAGATTGATCCAGAATGCCCCCGATGTGGTTATCATTTGGAGGATAGCATCCATGCAATATTCCAATGCCTGGATAGTGCACGTGTCTGGTTTGCATCCCTCTTAACCCTCTGA 645 44.19 MGLLGLMNFVFACMKILAKNQCKSKFLWVTGKGDQIRIWEGPWIATLPSLSISQSRPSSCSLRWVKELILPNRKWNEDLITSLIAPDIAQHITSIPLSHRDIPDRLMWAPHPHGKFTSKAAYHFWCQDLTHSGAQTLPKKLWKTIWHLRIPYRGRFFLWKFFRNILPTKSRIHAQITQIDPECPRCGYHLEDSIHAIFQCLDSARVWFASLLTL 214
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01147 214 Pfam zinc-binding in reverse transcriptase 116 207 IPR026960 -
Eupl14g01147 214 PANTHER ZF-RVT DOMAIN-CONTAINING PROTEIN 25 202 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01147 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:23903907 Eupl5g01086 Eupl-Chr5:32837403 dispersed
Eupl Eupl-Chr14:23903907 Eupl11g01488 Eupl-Chr11:24294953 transposed