AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01170 ATGTCGAATTTCTCTTCTCAGCTTCGACTATCTTCGACCCTCATCAAACGCCTTAAGCACCAAATCATAACAACAACCACAACAATGATTGAGAGAAGATCGTTTACGACCACTGAAGGATCTCGCCCCACTATCGTCCACAAGCGCAGCACAGACATCCTTCACGATCCTTGGTTCAACAAGGGAACGGCCTTCTCTATGACGGAACGAGATCGTCTCGATCTTCGTGGCCTTCTCCCTCCCAATGTGATGACTTCCCAACAACAAATTGAGCGCTTCATGGTTGACCTGAAAAGGCTTGAAGTGAATGCAAGAGATGGACCAGCTGATCCATATGCTTTGGCCAAGTGGCGGATACTTAACCGGTTGCATGACAGAAATGAGACAATGTACTACAAGGTTTTAATTGACAACATTGAGGAATATGCACCTATAGTTTATACACCCACCGTTGGGCTTGTTTGCCAGAAGTATAGTGGCTTGTTTAGAAGGCCACGGGGAATGTATTTCAGTGCAGCAGATCGTGGAGAAATGATGTCAATGGTTTATAACTGGCCAGCTGATCAGGTTGATATGATCGTGGTGACAGATGGAAGTAGAATATTGGGTCTTGGAGATCTTGGGGTTCAGGGTATTGGAATTGCAATCGGGAAGCTGGATTTATACGTTGCTGCGGCTGGGATAAATCCTCAGAGGGTACTTCCTGTGATGATTGATGTTGGAACTAATAATGAGAAGCTTCTCAAAGATCCTTTATATCTGGGAATGCAAGAACACCGCCTTGATGGCGAAGAGTACATTTCAGTTATTGATGAATTTATGGAGGCTGTTTTTACTCGCTGGCCACATGTGATTGTGCAGTTTGAAGATTTCCAAAGCAAGTGGGCCTTCAAGTTATTGCAGCGCTATAGAAATACCTACCGTATGTTTAATGACGATGTTCAGGGAACTGCAGGAGTTGCAATAGCTGGTCTTTTAGGAGCTGTAAGAGCACAGGGAAGACCAATGATAGACTTCCCAAAGCAGAAGATTGTTGTTGCTGGCGCTGGAAGTGCAGGAATAGGAGTTCTCAATGCTGCAAGGAAAACAATGGCAAGGATGATAGGCAATAATGAGTCTGCTTTTGAAAGTGCACGGAGTCAATTCTGGGTGGTTGATGCCAATGGCCTGATTACAGAGGACCGATCAAATATCGATCCAGATGCACTGCCGTTTGCAAGAAAACTCAAAGAAGTTGGTCATCAAGGATTAAGGGATGGAGCAAGCCTAGAAGAAGTGGTTCGTCAAGTAAAGCCTGATGTACTTCTTGGATTATCTGCAGTTGGGGGCTTGTTCTCTAAAGAGGTTTTAGAGGGCCTCAAAGGTTCAACTTCGACTAGACCAGCTATTTTTGCAATGTCAAACCCTACAAGAAATGCCGAATGCACCCCTGAAGAAGCATTTTCCATTGTGGGTGACCATATCATATTTGCAAGTGGAAGCCCATTCACAGATGTGGATCTTGGAAATGGTCAGATTGGCCACTGCAACCAGGGAAACAACATGTACCTCTTTCCAGGGATAGGGCTTGGTACTCTTTTATCTGGCGCCCGTCTCATCTCCGATGGCATGCTGCAGGCTGCAGCAGAATGCTTGGCGGCATATATGAAAGAAGAAGAGGTTCTCAACGGGATCATATATCCTTCAATATCCAGCATCCGTGATATAACAAAGGAGGTGGCTGCAGCTGTCGTGACAGAAGCTATAAAAGAGGATCTAGCAGAGGGATACCGTGACATGGATGCTCGAGAATTGCAAAAACTAAGTCAGGAGGAAATCGTGACGTATGTGAAGAACAATATGTGGAGCCCTGTCTATCCAACCATGGTATACAAAAGAGATTGA 1884 45.06 MSNFSSQLRLSSTLIKRLKHQIITTTTTMIERRSFTTTEGSRPTIVHKRSTDILHDPWFNKGTAFSMTERDRLDLRGLLPPNVMTSQQQIERFMVDLKRLEVNARDGPADPYALAKWRILNRLHDRNETMYYKVLIDNIEEYAPIVYTPTVGLVCQKYSGLFRRPRGMYFSAADRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVQGIGIAIGKLDLYVAAAGINPQRVLPVMIDVGTNNEKLLKDPLYLGMQEHRLDGEEYISVIDEFMEAVFTRWPHVIVQFEDFQSKWAFKLLQRYRNTYRMFNDDVQGTAGVAIAGLLGAVRAQGRPMIDFPKQKIVVAGAGSAGIGVLNAARKTMARMIGNNESAFESARSQFWVVDANGLITEDRSNIDPDALPFARKLKEVGHQGLRDGASLEEVVRQVKPDVLLGLSAVGGLFSKEVLEGLKGSTSTRPAIFAMSNPTRNAECTPEEAFSIVGDHIIFASGSPFTDVDLGNGQIGHCNQGNNMYLFPGIGLGTLLSGARLISDGMLQAAAECLAAYMKEEEVLNGIIYPSISSIRDITKEVAAAVVTEAIKEDLAEGYRDMDARELQKLSQEEIVTYVKNNMWSPVYPTMVYKRD 627
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01170 627 CDD NAD-bind-1-malic-enz 314 617 - -
Eupl14g01170 627 PANTHER MALIC ENZYME-RELATED 21 619 - GO:0004470(PANTHER)|GO:0004471(PANTHER)|GO:0005739(PANTHER)|GO:0006090(PANTHER)|GO:0006108(PANTHER)
Eupl14g01170 627 Pfam Malic enzyme, NAD binding domain 314 582 IPR012302 GO:0051287(InterPro)
Eupl14g01170 627 ProSitePatterns Malic enzymes signature. 310 326 IPR015884 -
Eupl14g01170 627 PIRSF ME 16 625 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 Gene3D - 312 626 - -
Eupl14g01170 627 PRINTS Malic enzyme signature 285 303 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 PRINTS Malic enzyme signature 344 360 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 PRINTS Malic enzyme signature 190 219 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 PRINTS Malic enzyme signature 226 248 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 PRINTS Malic enzyme signature 310 326 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 PRINTS Malic enzyme signature 130 154 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 PRINTS Malic enzyme signature 458 474 IPR001891 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 SMART Malic-M-2 314 582 IPR012302 GO:0051287(InterPro)
Eupl14g01170 627 Pfam Malic enzyme, N-terminal domain 124 304 IPR012301 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 Gene3D - 48 311 IPR037062 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 SMART malic-2 124 304 IPR012301 GO:0004470(InterPro)|GO:0016616(InterPro)
Eupl14g01170 627 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 314 624 IPR036291 -
Eupl14g01170 627 FunFam Malic enzyme 48 311 - -
Eupl14g01170 627 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 313 IPR046346 -
Eupl14g01170 627 FunFam Malic enzyme 312 626 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01170 K00028 malate dehydrogenase (decarboxylating) [EC:1.1.1.39]
Eupl14g01170 K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:28982060 Eupl14g01170 Eupl-Chr14:25126586 dispersed
Eupl Eupl-Chr14:25126586 Eupl8g00741 Eupl-Chr8:16132367 dispersed
Eupl Eupl-Chr14:25126586 Eupl14g00498 Eupl-Chr14:6131171 transposed
Eupl Eupl-Chr14:25126586 Eupl14g00531 Eupl-Chr14:6547591 transposed