AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01171 ATGACGACCATGGAGAGCTTGATCGGCCTCGTTAACAGAATCCAGAGGGCCTGTACGGTCCTCGGCGATTATGGTGGCGATAACGCGTTGCCGACACTCTGGGAAGCTCTTCCTTCAGTTGCCGTCGTCGGAGGACAGAGTTCTGGAAAATCCTCGGTTTTAGAGAGCATAGTTGGGCGCGATTTTCTTCCCAGGGGATCTGGGATCGTAACAAGGCGGCCATTGGTGTTACAGCTGCACAAGACAGATGAGGGGCAGCCGGAGTATGCAGAGTTTCTTCACTTGCCGAAGAGGAGATTCACTGATTTTGCCATGGTGCGCAAGGAAATTCAGGATGAAACTGATAGAATTACTGGGAGGTCGAAACAGATTTCTCCGGTTCCTATTCATCTCAGCATTTACTCTCCAAATGTTGTTAACTTAACATTGATAGATCTGCCTGGTTTGACAAAGGTTGCTATAGAGGGACAGCCAGATAGTATTGTTCAGGACATTGAAAACATGGTGCGCTCTTATGTTGAGAAGCCTAACTGCATCATACTAGCAATATCTCCAGCCAATCAAGATATAGCAACATCCGATGCTATCAAACTTGCTAGGGAAGTTGATCCCACAGGTGAAAGGACATTTGGGGTGTTGACAAAGCTAGATTTGATGGATAAGGGAACAAATGCCCTGGATGTTCTTGAAGGAAGATCTTATCGGCTGCAACGTCCTTGGGTTGGAATTGTTAACCGTTCGCAAGCTGATATCAATAGGAATGTCGACATGATTGCTGCCCGACATAGGGAGCGTGAATACTTTGCAAGTAGTCCTGACTATGGACACTTGGCAAGTAAAATGGGTTCAGAATATCTTGCAAAACTTCTCTCAAGGCATTTGGAATCTGTGATTAGGGCGCGTATACCAAGTATCACATCTTTGATAAACAAAAGCATTGATGAACTTGAAGCAGAGATGGACCACCTTGGTAGGCCCATTGCTGTTGATGCAGGGGCTCAGTTATACACTATCTTAGAACTTTGTCGTGCATTTGATCGGATATTCAAGGAGCATCTGGATGGAGGGCGGCCTGGTGGTGATCGGATATATGGAGTTTTTGACAACCAGCTTCCTGCTGCTTTGAGAAAGCTTCCATTCGATCGGCATCTCTCTGTGCAGAATGTTAAGAAAGTGGTTTCAGAGGCAGATGGTTACCAGCCCCATTTAATTGCTCCTGAGCAAGGTTACCGTCGCCTCATTGAGGGGGCTTTAAATTTTTTCAGAGGTCCAGTTGAAGCTTCAGTTGATGCTGTTCACTTTGTATTGAAGGAACTTGTGAGGAAGTCAATAGGAGAAACTCAGGAGTTGAGGCGTTTTCCAACACTTCAAGCTGAATTAGCAGCTGCTGCCAATGAAGCCTTGGAAAGGTTCCGAGACGACAGTCGCAAGACGACCTCGCGATTGGTGGACATGGAGTCATCATATTTGACCGTGGATTTCTTCCGAAAACTCCCGCAGGAAGTGGAGAAGGGGGGCAACCCAGCTGCTTCAACTATAGACCGATACTCAGAGGGGCACTTCAGGAGGATAGGGTCAAATGTCTCCTCTTATGTGGGTATGGTGGCTGAGATGCTCAAGAACTCGATCCCAAAGGCAGTGGTTTTTTGTCAAGTTCGGGAGGCTAAGCGGTCTTTACTCGATCACTTCTATACACAAGTGGGGAAGAAAGAGGCCAAGCAGCTTGCACAATTGTTGGATGAAGACCCAACATTGATGGAACGTAGGCAGCAATGTGCTAAGAGGCTTGAATTGTACAAGTCAGCAAGGGATGAGATTGATTCTGTGTCGTGGGCCCGATGA 1842 46.91 MTTMESLIGLVNRIQRACTVLGDYGGDNALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGQPEYAEFLHLPKRRFTDFAMVRKEIQDETDRITGRSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAIEGQPDSIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQRPWVGIVNRSQADINRNVDMIAARHREREYFASSPDYGHLASKMGSEYLAKLLSRHLESVIRARIPSITSLINKSIDELEAEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSVQNVKKVVSEADGYQPHLIAPEQGYRRLIEGALNFFRGPVEASVDAVHFVLKELVRKSIGETQELRRFPTLQAELAAAANEALERFRDDSRKTTSRLVDMESSYLTVDFFRKLPQEVEKGGNPAASTIDRYSEGHFRRIGSNVSSYVGMVAEMLKNSIPKAVVFCQVREAKRSLLDHFYTQVGKKEAKQLAQLLDEDPTLMERRQQCAKRLELYKSARDEIDSVSWAR 613
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01171 613 ProSiteProfiles GED domain profile. 521 613 IPR020850 -
Eupl14g01171 613 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 34 303 IPR030381 GO:0005525(InterPro)
Eupl14g01171 613 SMART dynamin-3 4 254 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01171 613 Pfam Dynamin family 40 216 IPR045063 -
Eupl14g01171 613 CDD DLP-1 37 303 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01171 613 SMART GED-2 516 609 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01171 613 Gene3D - 4 312 IPR027417 -
Eupl14g01171 613 Gene3D Dynamin, middle domain 329 579 - -
Eupl14g01171 613 FunFam dynamin-related protein 1E 4 312 - -
Eupl14g01171 613 Pfam Dynamin GTPase effector domain 517 609 IPR003130 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g01171 613 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 63 72 IPR019762 -
Eupl14g01171 613 FunFam Dynamin-related protein 1C 334 589 - -
Eupl14g01171 613 PANTHER DYNAMIN 5 609 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Eupl14g01171 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 311 IPR027417 -
Eupl14g01171 613 PRINTS Dynamin signature 185 203 IPR022812 -
Eupl14g01171 613 PRINTS Dynamin signature 227 246 IPR022812 -
Eupl14g01171 613 PRINTS Dynamin signature 204 220 IPR022812 -
Eupl14g01171 613 PRINTS Dynamin signature 135 152 IPR022812 -
Eupl14g01171 613 PRINTS Dynamin signature 37 55 IPR022812 -
Eupl14g01171 613 PRINTS Dynamin signature 62 79 IPR022812 -
Eupl14g01171 613 Pfam Dynamin central region 224 492 IPR000375 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01171 K27686 phragmoplastin DRP1 [EC:3.6.5.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:30393546 Eupl14g01171 Eupl-Chr14:25254670 dispersed
Eupl Eupl-Chr14:2131570 Eupl14g01171 Eupl-Chr14:25254670 dispersed
Eupl Eupl-Chr14:25254670 Eupl8g00284 Eupl-Chr8:4476752 dispersed
Eupl Eupl-Chr14:25254670 Eupl8g00987 Eupl-Chr8:27794484 wgd