AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01173 ATGCCCTTACTCTCTTCTCTCCATCTTTGTTATCGCCACCACCTTCTCCCCTCAAAGCCCCGTCTCCAAATAAGAGAAAAAACTTGTAGAGAAAATCGTTGCAGATTTCTAACTACTCCTCCAAGGATGTCCATTTCATCGGATTCTCACTCGGTAGAGAGCAGCAGATGTTCTTTTTCTGGTCTCTCTCCTCTTGATGCAATATTATTTGATATTGATGGGACACTATGTGACTCAGACCCTTTCCACTACTTTGCTTTCCGCGAAATGCTTCAAGAGGTGGGTTTCAATGGTGGGGTCCCCATAACTGAGGAATTCTTTATCGAGAATATCAGTGGCAAGCATAATGAATATATATGTGGCAGCCTCTTCCCTGATTGGGATGTCCAGAAGGGCCGAAAATTTATGGATGATAAGGAGGCAATGTTTCGGAGATTGGCATCCAAACAATTGAAGCCTGTAAGTGGCCTACACAATTTGTGCAAATGGATAGAAGATCGTAGCTTGAAGCGGGCCGCTGTGACTAATGCTCCAAGACCAAATGCTGAGCTCATTATCTCAATCCTAGGACTGTCCAATTTCTTCGAGATTCTTGTGATTGGTGGTGAATGTGACCGAGCAAAACCATTCCCTGATCCTTACCTAAAGGCTCTCCAAGCCCTTAAGGCATCTCCCAACCACACTTTTGTGTTTGAGGATTCCATGTCAGGAATAAAAGCTGGGGTGGCAGCTGGGATGCCAGTTGTGGGTATGGCTATCAGGAATCCTGAACACTTACTGATGGAAGCTGGTGCCACCTTCCTTATTAAAGATTTTGATGACCCAAAATTGTGGACAGCATTGGAAGAGCTAGAGAGAGAAGCAGCTGAAACAACAGTTGCCCCTTGA 888 44.93 MPLLSSLHLCYRHHLLPSKPRLQIREKTCRENRCRFLTTPPRMSISSDSHSVESSRCSFSGLSPLDAILFDIDGTLCDSDPFHYFAFREMLQEVGFNGGVPITEEFFIENISGKHNEYICGSLFPDWDVQKGRKFMDDKEAMFRRLASKQLKPVSGLHNLCKWIEDRSLKRAAVTNAPRPNAELIISILGLSNFFEILVIGGECDRAKPFPDPYLKALQALKASPNHTFVFEDSMSGIKAGVAAGMPVVGMAIRNPEHLLMEAGATFLIKDFDDPKLWTALEELEREAAETTVAP 295
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01173 295 NCBIfam HAD-IA family hydrolase 145 251 IPR006439 -
Eupl14g01173 295 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 58 287 IPR051600 -
Eupl14g01173 295 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 66 274 - -
Eupl14g01173 295 SUPERFAMILY HAD-like 60 284 IPR036412 -
Eupl14g01173 295 CDD HAD-BPGM-like 67 252 - -
Eupl14g01173 295 PRINTS Haloacid dehalogenase-epoxide hydrolase family signature 195 211 IPR006439 -
Eupl14g01173 295 PRINTS Haloacid dehalogenase-epoxide hydrolase family signature 65 76 IPR006439 -
Eupl14g01173 295 PRINTS Haloacid dehalogenase-epoxide hydrolase family signature 164 177 IPR006439 -
Eupl14g01173 295 PRINTS Haloacid dehalogenase-epoxide hydrolase family signature 213 233 IPR006439 -
Eupl14g01173 295 SFLD Haloacid Dehalogenase 66 274 - -
Eupl14g01173 295 Gene3D Putative phosphatase; domain 2 80 149 IPR023198 -
Eupl14g01173 295 Gene3D - 66 274 IPR023214 -
Eupl14g01173 295 Pfam Haloacid dehalogenase-like hydrolase 68 250 IPR041492 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01173 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:25299833 Eupl8g00988 Eupl-Chr8:27815544 dispersed