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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01192 ATGTTTATTTGGCGATTCCTGCGCGATATCCTTCCTTCCAAGGCCAAGCTTCATTCTCGCGGATCCCACACCCGAGCCGACTTTGTTGAAGAAGCCGAGGCTCGAGCTATAAGATGGGGTTTGGAGGTTGCCTATCGATTTGGGATGCATAAGCTTATTGTTGAATCGGATGCTATAGGCTTGGTCACAACTTTGAAGGGAGGCTCTTCTGACATAGGCTGGTCTTCTTCAGCCATCTCTGCAAATATTTTGACTCTATCCACCTCTTTTTCTTCGCTTTCTTTTAACTTTGTCCCCGGGTCTGTTAATGGGGCTGCTCATGCTATAGCTTTCAAAGCTCTTTATTTTTTGCGTTTTTTGCTCTGGGATAGGGATTTCCCCCCTTGGCTTTTATCAGCCTTAAGGGAAAACAGTCTGTCTCACTCGTCTGTATCCTCTCATCTTTTGGAATAG 453 45.7 MFIWRFLRDILPSKAKLHSRGSHTRADFVEEAEARAIRWGLEVAYRFGMHKLIVESDAIGLVTTLKGGSSDIGWSSSAISANILTLSTSFSSLSFNFVPGSVNGAAHAIAFKALYFLRFLLWDRDFPPWLLSALRENSLSHSSVSSHLLE 150
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01192 150 CDD RNase-H-like 6 110 IPR044730 -
Eupl14g01192 150 Gene3D - 6 114 IPR036397 GO:0003676(InterPro)
Eupl14g01192 150 Pfam Reverse transcriptase-like 27 111 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Eupl14g01192 150 PANTHER BNAC02G40300D PROTEIN 26 118 IPR052929 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01192 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:26152725 Eupl7g00478 Eupl-Chr7:12122644 dispersed
Eupl Eupl-Chr14:26152725 Eupl4g01399 Eupl-Chr4:22525704 transposed