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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01207 ATGGGTTTGGGTCACAATTTAGGTGATCGGATTAGAATGGGATTGGGAGTGGGGGACCGCATGGGCGTATTTTCTTGTCAAATTGGACCTCGGATCGGTTCTGGATTAGCACTGATCGGACTCGAACCCGATCCATTGAGAAGTGAGAACCCTGGTCCAGTATGCATATTGCGCATAGAGGCGTATCTTAGCAGAGTTATTATTAGCAAAGATATTAATGGCTTCAAACACAACGCAGGCTCTCTGTTTCTTCAAAGAACAGAGAAAGACAGAGGTAAGGCCATGGCGTCTGGAGCTTCACCATCATATCCCAGCGCTTCGAGAATTTCTGATTCCATCTGCTATCCTCAGTACACAGCTTCTCTTAAATGCCTAGAGGAATTTAAATCAGACAAGAGCAAATGTCAAGAACAATTTGATGTTTACAAGGAATGCAAGAAGAAGGAGAGGGAAGCTCGACTGGAACGCAACAGTAAAAGATCTTTCTTCTCGTGA 495 44.44 MGLGHNLGDRIRMGLGVGDRMGVFSCQIGPRIGSGLALIGLEPDPLRSENPGPVCILRIEAYLSRVIISKDINGFKHNAGSLFLQRTEKDRGKAMASGASPSYPSASRISDSICYPQYTASLKCLEEFKSDKSKCQEQFDVYKECKKKEREARLERNSKRSFFS 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01207 164 Pfam CHCH domain 114 148 IPR010625 -
Eupl14g01207 164 PANTHER CYTOCHROME C OXIDASE-ASSEMBLY FACTOR COX23, MITOCHONDRIAL 77 164 - -
Eupl14g01207 164 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 111 153 - -
Eupl14g01207 164 SUPERFAMILY Cysteine alpha-hairpin motif 114 150 IPR009069 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01207 K18185 cytochrome c oxidase assembly protein subunit 23
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:26232345 Eupl14g01207 Eupl-Chr14:26469056 dispersed