AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01216 ATGGCAAGAAAGATCTTCATCTCAAGAACAGCTGCTAAAACCCTAAATCAAATCCTCCGACGACCTCCATCCCCTTCGATCAACTCTCCTTGGGTTTCACCTTCTGCGGTTTCTCAATGCCTCAGACCGCTACACTCATTCGTTTCACACCTATTCCATTTTCGCAATATGGAGATAATCCAACCCTGCAATTCCAGATGCATGGTCACTTGCTCGATACCCCATTATGATATTGTGGAAGCCGTCTCGGCGGTGGCGCTGAATGTCGATAATCGGGTTCCTGCAACTGTAATCACTGGTTTCCTGGGTTCCGGAAAGACAACTCTCCTAAACCACATTCTAACTTCTCAACATGGCAAGCGGATTGCTGTCATAGAGAATGAGTTTGGGGAGGTGGATATCGATAGTTCATTGGTTGCTAGCCATTCCTCTGTTGCTGAGGACATTATTATGGTTAACAATGGCTGCTTATGTTGTACTGTTAGAGGAGATCTAGTTAAAATGCTTTTGGAGTTGGTTAAGAAGAAACGAGACAAGTTTGATCATATTGTCATAGAAACAACAGGTCTTGCAAAGCCTGCTCCTGTCATTGAAACATTCTGCACTGATGAATTGCTTTCACGATATGTGAAACTTGATGGTGTTGTTACCTTGGTTGACTGTAAGCATGCCATGCAGCATTTGGATGAAGTGAAACCCAGATTTGTCGTGAATGAGGCAGTAGAACAAGTTGCATACGCAGACCGTATCATTTTAAACAAGATAGATTTGGTGAGTGAGGCCGATTTGGAGGATTTGACTAAGAGAATTAAGCGTACCAATGGGATGGCACAAATCAAGCAAGCTAAATTTGGAGCTGTTGACATGGACTTTGTTTTAGGAGTTGGAGGATATGATCTCGATAGAATTGAATCTGAAGTTCAGGTAGATGGATCCCATGATTCAACCCATGAGCACGAGTCTGGGCATGAATACCAGAAAGGACATCACCATGATCATTTACATGATTCTGCTGTGTCCAGTGTCAGTATAGTTTCTGAGGGAACCCTTGATCTTGATGAGGTTGATGATTGGCTTGAAAGACTGATTGATGAAAAAGGGGACGACTTGTACAGGATGAAAGGGATTTTGTCCGTCAATGGTTCTGATGAGCGTTATGTTTTCCAGGGGGTCCATTCCACCTTGGATAGCTGCCCAGGCAAAACATGGGGAGGTGATGAGAAAAGGATAAACAAGCTTGTTTTCATAGGGAGGAGCTTGGATGAAGCTGCATTGAGGAAGGGTTTCAAAGGTTGTTTAGTGTGA 1305 43.52 MARKIFISRTAAKTLNQILRRPPSPSINSPWVSPSAVSQCLRPLHSFVSHLFHFRNMEIIQPCNSRCMVTCSIPHYDIVEAVSAVALNVDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDSSLVASHSSVAEDIIMVNNGCLCCTVRGDLVKMLLELVKKKRDKFDHIVIETTGLAKPAPVIETFCTDELLSRYVKLDGVVTLVDCKHAMQHLDEVKPRFVVNEAVEQVAYADRIILNKIDLVSEADLEDLTKRIKRTNGMAQIKQAKFGAVDMDFVLGVGGYDLDRIESEVQVDGSHDSTHEHESGHEYQKGHHHDHLHDSAVSSVSIVSEGTLDLDEVDDWLERLIDEKGDDLYRMKGILSVNGSDERYVFQGVHSTLDSCPGKTWGGDEKRINKLVFIGRSLDEAALRKGFKGCLV 434
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01216 434 SMART CobW-C-3 339 433 IPR011629 -
Eupl14g01216 434 FunFam GTP-binding protein YjiA 90 299 - -
Eupl14g01216 434 Gene3D - 317 433 IPR036627 -
Eupl14g01216 434 CDD CobW-like 94 296 - -
Eupl14g01216 434 Pfam CobW-HypB-UreG, nucleotide-binding domain 94 279 IPR003495 -
Eupl14g01216 434 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 309 IPR027417 -
Eupl14g01216 434 PANTHER COBW-RELATED 88 433 IPR051316 GO:0005737(PANTHER)
Eupl14g01216 434 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 339 433 - -
Eupl14g01216 434 Pfam Cobalamin synthesis protein cobW C-terminal domain 339 433 IPR011629 -
Eupl14g01216 434 MobiDBLite consensus disorder prediction 307 332 - -
Eupl14g01216 434 Gene3D - 90 298 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01216 K02234 cobalamin biosynthesis protein CobW
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:11490097 Eupl14g01216 Eupl-Chr14:26769665 dispersed
Eupl Eupl-Chr14:26769665 Eupl9g01383 Eupl-Chr9:27942761 dispersed