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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01217 ATGCCGAGAGAATCAGATATTGGTTGGGATCACTGTGTTGCAATTGGGGGCAATAAGAAGATTGTTAAATGCAACTATTGTGACAAGATAATGCATGGGGGGGTTACAAGATTGAAACAACATATTATTGCGCGCCCAGGAGATGTAACAGCTTGTCCTAAAGCTCCTAGGGAAGTAAGATTGTTAATCACAAACCATTTGCAGTTAACCAAACAGATGAAGGCTGCTGAGCAAAGAAGAAGAGATCAAATACAAGAAAGATTAAATGAGTTGGGTAGTAGTGGTGGTGGAAGAGAAGAAGCTGAGGAAGAGGAAGAGGAAGAGAATATTGATATTCCTGCTGAAGTGGAAGATCAATATCGTCCATATTGA 372 40.32 MPRESDIGWDHCVAIGGNKKIVKCNYCDKIMHGGVTRLKQHIIARPGDVTACPKAPREVRLLITNHLQLTKQMKAAEQRRRDQIQERLNELGSSGGGREEAEEEEEEENIDIPAEVEDQYRPY 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01217 123 Coils Coil 66 94 - -
Eupl14g01217 123 PANTHER BED-TYPE DOMAIN-CONTAINING PROTEIN 4 106 - -
Eupl14g01217 123 MobiDBLite consensus disorder prediction 99 113 - -
Eupl14g01217 123 MobiDBLite consensus disorder prediction 77 123 - -
Eupl14g01217 123 ProSiteProfiles Zinc finger BED-type profile. 3 59 IPR003656 GO:0003677(InterPro)
Eupl14g01217 123 Pfam BED zinc finger 9 52 IPR003656 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01217 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:26794086 Eupl7g01693 Eupl-Chr7:38985092 dispersed
Eupl Eupl-Chr2:20640035 Eupl14g01217 Eupl-Chr14:26794086 transposed
Eupl Eupl-Chr14:26794086 Eupl8g00925 Eupl-Chr8:26241940 wgd