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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01221 ATGGCAGAATGTCACACCATAATTGAAGGAGTTGCCATCACCTTAGAACATGAATGGAGACATATTTGGATTGAATCGGATTCTGAGTCGACAATCAAAGCTTTCAACATTGAAGATATACCTTGGAAGATCATAGGCAAATGGAACTCCATAAAATATAAACTTGTGTGGATTCGCATGACCTCCACTTGGAGAGAGGTCAACTTTGGTTCTGACCGATGCACAAACATTGGAGCATACCTTCCAAATGGATCTTCCCAATGGTGGCCTTCAAAACCACCTTTTTCACTTTCGGTGGAAGACCCTTACAAAACTTATTACCGATTCTGGCCTTGA 336 41.37 MAECHTIIEGVAITLEHEWRHIWIESDSESTIKAFNIEDIPWKIIGKWNSIKYKLVWIRMTSTWREVNFGSDRCTNIGAYLPNGSSQWWPSKPPFSLSVEDPYKTYYRFWP 111
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01221 111 Pfam Reverse transcriptase-like 1 36 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01221 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:6351709 Eupl14g01221 Eupl-Chr14:27030790 dispersed
Eupl Eupl-Chr14:27030790 Eupl6g01726 Eupl-Chr6:35401418 dispersed
Eupl Eupl-Chr14:27030790 Eupl6g01543 Eupl-Chr6:29741590 transposed