AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01254 ATGGAGGAGCAAATATGGCCGGAGTTGCAGACTTGGAAGAGAGGGGGTTGCACAACAAGCGAGAGACCTGTTGTGGTGGTTGATGATGGAGAATGTGATGGAGGTGGAGATGGTACTGGACTGCTGCACGTGGTGGGGCAGGAGGTGTGTGAAAGGAAGCTAACGGCCTACAAGGTGTGGTATCTCTTTGTAGAGAAGGCAGAGGTTGACTTCGGGAAGTTGAAAAGATTAAGCAAAAACAAGGGGATGGGACGGAGAGTAATAATGAATGTAAAGAGGGCAATGTGGCCAAAACAGTGGAAGGGGCGAGAAGGTTACAAAGTGATCCGATCCATTTCGTTCGGAGCTCCAAGTACGCATCCTGGAAGTACAAAGCCAGGCTCAAAGCACACGAGACGTTGGAGAAATCTAAGCAGTAGCGCGAAGCAGAGAGAGAGAGGGATGGCAGTGGGTCTTGCTCCGGGATTGTCACGGAAGCTGAAGAAGGTGTTGGAGTCTCGAACGGACTCGCCGGATCTGTTGGCTTCCCTCAATACGCTCTCGTCGTTCTACACAGAGAACACACAGCAGGCTCGGAGGAATCTCAGATCCACTGTCGAGAGGCGATCTCTATCCATCAACCATGAATTCCTCCAAGCCTCCGAGTCCGCCCAACAGGCCTTGGATCGGGTGGAGGATGAAGTGAACGCATTAGCGGAATGCTGCGATAAGATTGCCAAGGCACTGAGCAGTTGCAGTGCAAGTACCGGAGATATTATCAATACCACAGAGAGATTCAAACAGGAACTTGAGATCACTACTCAACGTCAAGAGATTGTGTCGTGCTTTCTTCGGGATTATCAGCTTTCTAACGAAGAGATTAATGCACTGAGGGAAGAGGACCTGAATGAGAATTTTTTCAAGGCACTATCCCATGTTCAAGAAATTCATGCCAACTGCAAGCTACTTCTCAGGACACATCATCAGAGAGCTGGTTTGGAGCTGATGGATATGATGGCTGTATACCAAGAGGGAGCCTACGAGCGTCTGTGCAGGTGGGTTCAGTCAGAGTGTAGGAGATTGGGTGACAGTGATAATCCTGAAGTTAGTGAGCTTTTGAAGATGGCCGTTTGCTGCCTGAAGGAAAGGCCTGTCCTTTTTAAGTACTGCGCGGAAGAGGTGGCAAATATGAGGCATAATGCATTGTTTAGAAGGTTTATAAGTGCCCTTACACGTGGAGGACCTGGTGGGATGCCTAGACCGATTGAAGTGCATGCTCATGACCCTTTACGTTATGTAGGTGATATGTTGGGGTGGCTACATCAGGCCTTGGCATCTGAAAGAGAACTTGTTTTCATATTACTTGATCCAGATGCAGTGGTAGATACTGGACCAACCGCACGCCGATTCTTCAAGAACACAGAAATTGATTCTACGAAAACTGAATCTGACATTACATTCGTTCTGGATAGAATATTTGAAGGTGTTTGCCGGCCATTCAAAGCGAGAGTTGAGCAAGTTTTGCAGTCTCAACCTAGTCTTATAATTTCATATAAGCTTAGCAATACACTGGAGTTCTACAGCTACACTATTTCGGACTTGCTGGGGAGAGAAACGGCTCTCTGTAATACACTGTGGCTACTTAAGGATGCTGCTCAGCAAACTTTCTTTGACATCCTGAAGACTAGAGGCGACAAGCTTTTACGGTACCCTCCCCTTGTTGCGGTTGATCTATCACCCCCACCAGCAGTGAGGGAAGGAGTCTCTGTATTGCTCGAAATAATTGAGACTTACAACAGCATGATGGTTCCTGCTTCAGGAAAGAAGACTGACTTTGATCTGGTGATCTCTGCTTTACTAGATCCTATAGTTCAGATGTGTGAGCAAGCAGCAGAGGCACACAAATCCAAAGGAGTAAATTACTCATCGAGGAGAAGTAGAATAAGTGCTGATTCAGGCCCATTCGGTAGAGATTCATCATCAGTTGATGCAATTTTGACTAACAGCAGTTCCATTCCGTCCTCTCAGAATAGTGAAATGCCCTCCAAGATCTTCCTCATCAACTGCTTGTCTGCCATCCAGCAGCCATTGCTGGGACATGATGTTGCTGCGGAATATGAGAGGAATCTTGGATCCATGATCGAGAAACATGTAAACGTTCTCGTGGAAAAAGAGGTAGACACCATCCTAAGAAGATGTGGTTTGTTAAACAAGGTATCTCACATCCAGAATTTGGTCAACAAAGAGGAAGACAGTGATACGATCATGAGTTTGCCATTAGCGGAGGTAGAGGACATGTCTCCAGCCTCACTTTCAGAGTGCTTGAAGGCTTTCTTTGGACTCGTGTTAGGAAGTGAAGGTTCCCTGCCAGAATTTGAGCTGATGCAGGTTCCTCGGCTGCGTTCAGAGACTTGCATTCGCGTGGCAAGGTCACTTGCAGAAGCTTACGAGCTTGTTTACAAGGCGATCATGGATCCCAAGAGCTGTTATCCAGACCCCAAGTCCTTGGCAAGGCATCCACCGGATCAGATAAGGACCATCTTGGGGATTTGA 2532 47.27 MEEQIWPELQTWKRGGCTTSERPVVVVDDGECDGGGDGTGLLHVVGQEVCERKLTAYKVWYLFVEKAEVDFGKLKRLSKNKGMGRRVIMNVKRAMWPKQWKGREGYKVIRSISFGAPSTHPGSTKPGSKHTRRWRNLSSSAKQRERGMAVGLAPGLSRKLKKVLESRTDSPDLLASLNTLSSFYTENTQQARRNLRSTVERRSLSINHEFLQASESAQQALDRVEDEVNALAECCDKIAKALSSCSASTGDIINTTERFKQELEITTQRQEIVSCFLRDYQLSNEEINALREEDLNENFFKALSHVQEIHANCKLLLRTHHQRAGLELMDMMAVYQEGAYERLCRWVQSECRRLGDSDNPEVSELLKMAVCCLKERPVLFKYCAEEVANMRHNALFRRFISALTRGGPGGMPRPIEVHAHDPLRYVGDMLGWLHQALASERELVFILLDPDAVVDTGPTARRFFKNTEIDSTKTESDITFVLDRIFEGVCRPFKARVEQVLQSQPSLIISYKLSNTLEFYSYTISDLLGRETALCNTLWLLKDAAQQTFFDILKTRGDKLLRYPPLVAVDLSPPPAVREGVSVLLEIIETYNSMMVPASGKKTDFDLVISALLDPIVQMCEQAAEAHKSKGVNYSSRRSRISADSGPFGRDSSSVDAILTNSSSIPSSQNSEMPSKIFLINCLSAIQQPLLGHDVAAEYERNLGSMIEKHVNVLVEKEVDTILRRCGLLNKVSHIQNLVNKEEDSDTIMSLPLAEVEDMSPASLSECLKAFFGLVLGSEGSLPEFELMQVPRLRSETCIRVARSLAEAYELVYKAIMDPKSCYPDPKSLARHPPDQIRTILGI 843
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01254 843 Pfam Conserved oligomeric complex COG6, N-terminal 180 292 IPR048368 -
Eupl14g01254 843 MobiDBLite consensus disorder prediction 115 148 - -
Eupl14g01254 843 Pfam Conserved Oligomeric Golgi complex subunit 6, C-terminal 322 841 IPR048369 -
Eupl14g01254 843 Coils Coil 207 234 - -
Eupl14g01254 843 PANTHER COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 152 843 IPR010490 GO:0006891(InterPro)|GO:0006891(PANTHER)|GO:0017119(PANTHER)|GO:0017119(InterPro)
Eupl14g01254 843 SMART COG6-2 175 841 IPR010490 GO:0006891(InterPro)|GO:0017119(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01254 K20293 conserved oligomeric Golgi complex subunit 6