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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01263 ATGACCAGATCATTGAAAGAAGACGGAGAAAAAGTTCAAAAAGAGCAAGTCAGAGAGGAAAGTGATGAAGAACTCACAACCACCAGCAAGCCTCAGCCTAGCATCAAGCCAGCAACACAAGCTCAGCCTCAACCTCAGCCCCAGTCCGAGTCTGATTCAGATTCCGATTCTGAATCCGATTCCGATTCTGAAGAAAAAAACCGGTCCGCAGCCAAACGCCCTGCCCATGTTGATAAGGACGAGACTAATATGAAGAGAAGGAAGGTGAATACACATGCATTAGATGGTGGTGATGAGGATGATAGCGACGAAGAGGAAGATACTACACTTGTCAATGTAGCTACCAAGGAAAAGACTTCGAGCGATGCTATGAAACAATCAATTCGGAGGGTGTGGAGTGAAGAGGACGAAATTATACTCTTGGAAGGCCTGCTTAATTACTACGAGAAAGGCTCTAACCCTGACAATCAAGAAGCATTCTTAGATTTTATCAAACCTTCTATTCACTTTGATGTCAGTCAAGATCAATTGAAGAGCAAGATCCGTCATTTGAATGATAAATACAAAAAGAAAGCTGGAAATGCCAAACTTGGTTGCGACCCTACTTTCTTTAGTATCCATGAAAAGAAGTCTTACGAACTATGGAAGAATATAAGGGATTGGAAGCAAGGCAGCAGTGCTAAAGAGGAGAAGAGGGGTAATGTGGTAAAATTTGATTCACTCAAAAACCCATATTTGAGTGAGTACATGCAATTTGCAAAAGATTCTGGTATGAATTTGAGTGGGAGTGTTTTGAAACAAGGGTTGAGTTTAATTGGGAGCATGAAGGCAGATGAATTAAATGAAAAGTGGATGAATCAACAAATGTTGGAAGCTGAAGTTTTCTTGAAGCGTACTGAACTAATTCATGACCAGCTCAAACTTGTAGTGGATGCTCTAAAGTCTTTAACAAAGTGTTAG 960 40.83 MTRSLKEDGEKVQKEQVREESDEELTTTSKPQPSIKPATQAQPQPQPQSESDSDSDSESDSDSEEKNRSAAKRPAHVDKDETNMKRRKVNTHALDGGDEDDSDEEEDTTLVNVATKEKTSSDAMKQSIRRVWSEEDEIILLEGLLNYYEKGSNPDNQEAFLDFIKPSIHFDVSQDQLKSKIRHLNDKYKKKAGNAKLGCDPTFFSIHEKKSYELWKNIRDWKQGSSAKEEKRGNVVKFDSLKNPYLSEYMQFAKDSGMNLSGSVLKQGLSLIGSMKADELNEKWMNQQMLEAEVFLKRTELIHDQLKLVVDALKSLTKC 319
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01263 319 PANTHER BNAANNG10740D PROTEIN-RELATED 44 315 IPR007592 GO:0005634(PANTHER)|GO:0006355(InterPro)
Eupl14g01263 319 MobiDBLite consensus disorder prediction 1 121 - -
Eupl14g01263 319 MobiDBLite consensus disorder prediction 61 96 - -
Eupl14g01263 319 MobiDBLite consensus disorder prediction 1 26 - -
Eupl14g01263 319 Pfam Glabrous-enhancer-binding protein-like family, DBD domain 129 218 IPR053932 -
Eupl14g01263 319 MobiDBLite consensus disorder prediction 27 52 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01263 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:28312813 Eupl6g00659 Eupl-Chr6:9996358 dispersed
Eupl Eupl-Chr14:28312813 Eupl12g01364 Eupl-Chr12:30257642 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00266 . 328 530 GeBP Transcription Factor family AT5G14280 66.995 9.30e-94 286.0
Eupl11g00749 . 3 333 GeBP Transcription Factor family AT1G11510 31.095 8.73e-38 138.0
Eupl11g01633 . 142 233 GeBP Transcription Factor family AT3G04930 39.785 9.34e-13 64.7
Eupl11g01630 . 142 233 GeBP Transcription Factor family AT3G04930 39.785 1.35e-12 64.3
Eupl1g01397 . 114 235 GeBP Transcription Factor family AT3G04930 32.787 1.17e-14 72.8
Eupl6g00659 . 3 333 GeBP Transcription Factor family AT1G11510 31.742 4.36e-36 134.0
Eupl4g00390 . 327 572 GeBP Transcription Factor family AT5G14280 65.447 9.58e-113 333.0
Eupl4g01770 . 125 406 GeBP Transcription Factor family AT5G28040 26.19 1.15e-18 85.5
Eupl5g00928 . 142 237 GeBP Transcription Factor family AT3G04930 37.5 6.22e-12 63.5
Eupl7g01728 . 66 423 GeBP Transcription Factor family AT5G28040 44.355 2.05e-87 270.0
Eupl14g01263 . 52 350 GeBP Transcription Factor family AT1G11510 29.508 4.61e-21 90.5
Eupl5g01629 . 3 344 GeBP Transcription Factor family AT1G11510 29.949 8.11e-35 130.0
Eupl12g00888 . 130 220 GeBP Transcription Factor family AT5G28040 40.659 8.87e-12 62.4
Eupl12g00886 . 130 220 GeBP Transcription Factor family AT5G28040 41.758 3.25e-11 60.5
Eupl12g01364 . 59 423 GeBP Transcription Factor family AT5G28040 45.293 1.44e-86 268.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl GeBP-like_DBD 1.8e-22 CL0123 TF GeBP