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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01266 ATGCTGACTACCAAGTTCGAATCCGTCAGAATGGAGGAGAACGAGACATATGCTGAGTTTTATGCTAAAGTCAGTGATATTGTCAACTCTGCCCACAATTTGGGAGAGATTATCCTTGAACCCAAAGTGGTCAGGAAAGTGTTGAGATCTCTGCCTGAGAGGTTTCAAGCAAAGGTTACAGCAATCGAGGAGAGCAAAGATGTTGACTCCCTCAAGATTGATGAATCGGTTGGTTCTCTGCAAACTTTTGAATTAAACATGAGACAACTAAAGAAAACCAAGGGCATTGCCCTTAGAGCTTCAAAAGCTCATGAACCAGAGTCTGAGACAGACTCTGAAGAGAATCTAGCCCTCTTTGTTAAAAAGTTATGA 372 41.94 MLTTKFESVRMEENETYAEFYAKVSDIVNSAHNLGEIILEPKVVRKVLRSLPERFQAKVTAIEESKDVDSLKIDESVGSLQTFELNMRQLKKTKGIALRASKAHEPESETDSEENLALFVKKL 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01266 123 Pfam gag-polypeptide of LTR copia-type 2 80 - -
Eupl14g01266 123 PANTHER OS04G0629600 PROTEIN 4 92 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01266 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:28435805 Eupl7g00566 Eupl-Chr7:16531275 dispersed
Eupl Eupl-Chr4:28960272 Eupl14g01266 Eupl-Chr14:28435805 transposed
Eupl Eupl-Chr14:20408876 Eupl14g01266 Eupl-Chr14:28435805 wgd