AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01270 ATGGATATCGAGCAGAAGCAAGCAGAGCTGATCGAGTACTTCGTCAAGCAATCAGAGATTCACAAAGGGGCATCTCTCGCGAATTTAATTGTCGAAGCTACTTCGCATTCGTCTCTCTTCGCGTTCTCTGAGATTCTATCGGTCGCCAACGTTGTCGAGCTTCAAGGGACTGAGTATTCTGTGTATCTTGATGTGCTCCGTTTGTTTGCTCATGGCACATGGAGTGATTACAAGAGTAATGCTGGCTGTCTTCCTCCACTCGTACCCGATCAAGTCCGTAAGCTAAAACAGCTTAGTGTGCTTACACTGGCTGAGACAAACAAGGTACTCCCCTATGATCAACTCATGCAGGAGGTAGATGTTTCAAATGTACGTGAACTTGAAGACTTTCTTATCAATGAGTGCATGTATGCGGGCATAGTTCGAGGAAAGCTGGATCAGTTGCGAAGATGCTTTGAGGTACAATTTGCAGCTGGAAGGGATTTGAGACCAGGACAGCTTGGAAGTATGATACAGACATTATCAACTTGGTTAGGTACATCAGACAACTTACTTCTTTCAATTCAAGAGAAGATCAAATGGGCAGATACAATGAGTGAGTTGGACAAAAAACATCGAAAGGAAGTCGAAGATAAGGTGGAAGAAGTGAAGAAGTCCCTATCCCTCAAGGAGATCTCTTACTCTGGAGCCATCAAAATGGCGGGTCCTGATCTCGATGCAATAATTTTTCAAGATATATAA 741 43.72 MDIEQKQAELIEYFVKQSEIHKGASLANLIVEATSHSSLFAFSEILSVANVVELQGTEYSVYLDVLRLFAHGTWSDYKSNAGCLPPLVPDQVRKLKQLSVLTLAETNKVLPYDQLMQEVDVSNVRELEDFLINECMYAGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSTWLGTSDNLLLSIQEKIKWADTMSELDKKHRKEVEDKVEEVKKSLSLKEISYSGAIKMAGPDLDAIIFQDI 246
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01270 246 ProSiteProfiles PCI domain profile. 1 159 IPR000717 -
Eupl14g01270 246 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 7-DENDRITIC CELL PROTEIN GA17 6 220 IPR045237 GO:0008180(PANTHER)
Eupl14g01270 246 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 86 177 IPR000717 -
Eupl14g01270 246 Pfam CSN7 helical bundle subdomain 14 43 - -
Eupl14g01270 246 Pfam PCI domain 84 155 IPR000717 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01270 K12180 COP9 signalosome complex subunit 7
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:28779775 Eupl8g00818 Eupl-Chr8:23429299 wgd