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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01272 ATGGCAACACCAGATGAAGCTACGGCCCTCGATCTCATCAGACATCACCTTCTCGGCGATTTCGCCTCTCTTGAAACCTTTCTAACTGATTTCACCTTTACTAACTCGAAAATCTCTGGAAATCAGCCAGAGATTATGTTCTCGCCAACTGATTCCCTCTGTTCACGAACCGCAAGTTTTGAATCTTCGGTTTCGGAGCATAAAAATGACATCTTTAATGATGTTTTTCAGTCTGTATCTCTAGTTTCAGAACCGGAAATTGAAATCTCTGATTACTTGAAGCTCGATGAGGACGATAACAGCGATCTCTTCGAGTTCTTGCCTGATTCGGTCTCTTATCAGAATGATTCCTTCTTTCAATTCGAAACAAAATCTGAAACCCTCACTTCGACATCTTCTCAATCGAGCTTAAAAGATCGCCGACCTTCGTTGAAGATCTCTCTACCTCCTGTGGAGAAAGTCGAGTGGTTTGACTTCACTGAACCGCCTCAACCGGCTGCAACAGTTTCCAACCAAAAACCTTCAGATTCCGACGAGAAGAAACACTACAGAGGCGTACGGCAACGCCCGTGGGGGAAATTCGCTGCGGAGATTCGAGACCCTAACCGTCGAGGGTCTAGGGTTTGGCTTGGAACCTTTGAGACCGCCATCGAAGCTGCTAAAGCTTACGATCGTGCAGCCTTCAAGATGCGTGGGAGCAAAGCCATCCTCAACTTCCCTCTCGAGGCCGGAAAGAATACTGACACACCAGTTAACACTGGTCGGAAAAGACGCAGAGACACTGAACCAGAAGAGAAAAAACAAGTAGAGATGAAGCCGGTTAAGAAGGAGAGATCACCGAAATCTGACATGAAGGCGAGTATTTCGACCGTTGGATCAATAACGCCGTCAAGTTGGACAAACTTTTGGGATGGCTTGGACGTTAAGGGTTTCTTTAACGCCCCTCTACTGTCACCGTTATCTCCACATCCTTCCTTAGGTTATCCACAGCTTATGGTCATCTGA 1005 46.47 MATPDEATALDLIRHHLLGDFASLETFLTDFTFTNSKISGNQPEIMFSPTDSLCSRTASFESSVSEHKNDIFNDVFQSVSLVSEPEIEISDYLKLDEDDNSDLFEFLPDSVSYQNDSFFQFETKSETLTSTSSQSSLKDRRPSLKISLPPVEKVEWFDFTEPPQPAATVSNQKPSDSDEKKHYRGVRQRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAAKAYDRAAFKMRGSKAILNFPLEAGKNTDTPVNTGRKRRRDTEPEEKKQVEMKPVKKERSPKSDMKASISTVGSITPSSWTNFWDGLDVKGFFNAPLLSPLSPHPSLGYPQLMVI 334
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01272 334 SUPERFAMILY DNA-binding domain 182 241 IPR016177 GO:0003677(InterPro)
Eupl14g01272 334 CDD AP2 181 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 MobiDBLite consensus disorder prediction 162 186 - -
Eupl14g01272 334 PRINTS Ethylene responsive element binding protein signature 222 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 Pfam AP2 domain 182 233 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 Gene3D AP2-ERF domain 181 242 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 FunFam Ethylene-responsive transcription factor 2 181 242 - -
Eupl14g01272 334 ProSiteProfiles AP2-ERF domain profile. 182 240 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 PANTHER DNA-BINDING DOMAIN 128 275 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Eupl14g01272 334 MobiDBLite consensus disorder prediction 251 283 - -
Eupl14g01272 334 SMART rav1-2 182 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Eupl14g01272 334 MobiDBLite consensus disorder prediction 244 289 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01272 K09286 EREBP-like factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:28877923 Eupl8g00815 Eupl-Chr8:23391758 dispersed
Eupl Eupl-Chr14:28834437 Eupl14g01272 Eupl-Chr14:28877923 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g01359 . 18 317 CBF gene family AT1G68550 35.89 7.93e-37 132.0
Eupl11g00072 . 20 171 CBF gene family AT5G61890 56.209 3.51e-51 166.0
Eupl11g00044 . 7 91 CBF gene family AT5G13910 88.372 4.97e-49 157.0
Eupl11g00832 . 19 95 CBF gene family AT5G19790 73.75 1.62e-32 121.0
Eupl11g00729 . 69 323 CBF gene family AT1G51190 44.322 9.56e-61 202.0
Eupl11g00690 . 28 234 CBF gene family AT3G54320 66.667 6.16e-90 277.0
Eupl6g01061 . 13 303 CBF gene family AT4G18450 35.526 4.31e-44 150.0
Eupl6g01013 . 1 195 CBF gene family AT5G44210 45.188 1.70e-48 156.0
Eupl6g01011 . 1 186 CBF gene family AT1G28360 48.677 7.82e-43 139.0
Eupl3g00059 . 19 117 CBF gene family AT5G25810 59.223 2.38e-32 114.0
Eupl3g00132 . 2 182 CBF gene family AT1G71450 53.476 2.85e-57 176.0
Eupl13g01266 . 50 229 CBF gene family AT1G21910 50.505 2.74e-45 149.0
Eupl4g01524 . 1 361 CBF gene family AT1G25560 62.304 2.51e-154 436.0
Eupl4g01580 . 19 290 CBF gene family AT1G68550 39.203 1.29e-36 132.0
Eupl3g01245 . 14 195 CBF gene family AT4G34410 46.04 1.02e-37 132.0
Eupl3g01182 . 1 314 CBF gene family AT4G36920 66.286 6.82e-126 372.0
Eupl3g01178 . 29 152 CBF gene family AT1G46768 66.667 5.55e-51 157.0
Eupl3g01344 . 20 169 CBF gene family AT5G61890 47.02 4.15e-36 131.0
Eupl5g00830 . 8 251 CBF gene family AT5G19790 50.0 9.27e-59 185.0
Eupl8g00663 . 16 222 CBF gene family AT5G51990 58.14 7.21e-78 236.0
Eupl8g00661 . 59 231 CBF gene family AT5G52020 56.322 4.64e-51 163.0
Eupl8g00670 . 5 85 CBF gene family AT5G19790 60.494 1.44e-27 106.0
Eupl8g00664 . 1 216 CBF gene family AT4G25480 58.296 8.46e-78 232.0
Eupl1g01499 . 62 206 CBF gene family AT4G17500 51.007 7.78e-44 149.0
Eupl1g01609 . 1 447 CBF gene family AT2G28550 50.489 7.46e-117 350.0
Eupl13g01685 . 1 334 CBF gene family AT1G78080 47.583 1.15e-90 274.0
Eupl13g01619 . 2 79 CBF gene family AT1G12890 68.354 1.91e-31 109.0
Eupl13g01526 . 30 142 CBF gene family AT2G33710 60.177 1.12e-36 130.0
Eupl3g01635 . 1 442 CBF gene family AT5G10510 59.912 5.43e-152 444.0
Eupl1g00090 . 39 387 CBF gene family AT3G54320 49.733 1.52e-106 316.0
Eupl5g00135 . 30 390 CBF gene family AT3G54320 52.406 4.10e-106 318.0
Eupl4g01158 . 3 85 CBF gene family AT5G25190 52.222 5.88e-21 87.4
Eupl4g01031 . 232 264 CBF gene family AT5G65510 75.758 2.15e-11 63.5
Eupl4g01032 . 207 387 CBF gene family AT1G72570 67.204 8.49e-87 266.0
Eupl4g00967 . 49 234 CBF gene family AT3G54320 74.194 9.12e-87 268.0
Eupl4g00535 . 1 221 CBF gene family AT1G24590 38.926 4.45e-40 142.0
Eupl4g00124 . 1 166 CBF gene family AT5G13330 54.19 1.72e-48 157.0
Eupl4g00088 . 7 203 CBF gene family AT5G13910 47.39 1.66e-53 171.0
Eupl6g00186 . 22 193 CBF gene family AT4G34410 38.542 5.34e-28 106.0
Eupl6g00185 . 22 202 CBF gene family AT4G34410 32.836 3.54e-23 91.3
Eupl9g00794 . 17 187 CBF gene family AT4G31060 44.186 7.90e-44 142.0
Eupl12g00200 . 1 583 CBF gene family AT5G17430 42.127 4.82e-141 424.0
Eupl12g00232 . 177 265 CBF gene family AT1G51120 36.667 5.39e-07 47.8
Eupl9g00640 . 10 185 CBF gene family AT1G19210 49.479 1.61e-51 162.0
Eupl9g00566 . 1 409 CBF gene family AT1G72570 52.183 3.35e-142 416.0
Eupl9g00686 . 1 358 CBF gene family AT1G53910 47.407 1.86e-81 251.0
Eupl13g01058 . 24 182 CBF gene family AT1G71450 60.366 2.81e-60 184.0
Eupl1g00642 . 10 252 CBF gene family AT5G19790 47.148 3.50e-59 187.0
Eupl1g00837 . 12 228 CBF gene family AT4G27950 42.667 1.24e-43 149.0
Eupl1g00972 . 1 329 CBF gene family AT2G40340 36.512 6.44e-56 185.0
Eupl1g01020 . 40 327 CBF gene family AT2G40220 43.403 2.04e-48 162.0
Eupl1g01162 . 62 295 CBF gene family AT1G68840 52.766 1.90e-73 229.0
Eupl1g01295 . 38 221 CBF gene family AT5G51990 53.226 4.66e-63 194.0
Eupl1g01297 . 10 184 CBF gene family AT2G36450 60.0 5.58e-54 169.0
Eupl8g00381 . 11 234 CBF gene family AT4G27950 50.84 6.76e-64 203.0
Eupl8g00334 . 158 334 CBF gene family AT1G64380 47.222 3.58e-26 99.8
Eupl3g00924 . 182 467 CBF gene family AT4G37750 73.958 8.67e-139 410.0
Eupl9g01183 . 95 343 CBF gene family AT1G16060 60.741 1.34e-84 255.0
Eupl9g01300 . 1 174 CBF gene family AT5G25190 62.903 7.80e-75 221.0
Eupl10g00908 . 20 218 CBF gene family AT5G11590 61.5 1.12e-75 227.0
Eupl8g00259 . 3 161 CBF gene family AT1G01250 63.522 1.10e-56 175.0
Eupl13g00465 . 1 318 CBF gene family AT5G10510 45.672 2.04e-64 216.0
Eupl13g00574 . 27 199 CBF gene family AT4G34410 44.324 9.12e-31 114.0
Eupl13g00575 . 27 195 CBF gene family AT4G34410 42.553 4.42e-29 108.0
Eupl13g00626 . 1 313 CBF gene family AT4G36920 69.209 5.96e-133 392.0
Eupl13g00630 . 16 117 CBF gene family AT5G67190 77.451 3.35e-52 161.0
Eupl3g01428 . 1 334 CBF gene family AT1G78080 46.929 9.44e-89 270.0
Eupl10g01209 . 1 405 CBF gene family AT1G72570 51.282 5.84e-132 400.0
Eupl10g01297 . 1 358 CBF gene family AT1G53910 46.078 1.07e-80 249.0
Eupl10g01264 . 11 185 CBF gene family AT1G19210 52.128 2.19e-56 175.0
Eupl10g01263 . 1 172 CBF gene family AT1G74930 44.068 1.90e-42 139.0
Eupl11g01492 . 10 80 CBF gene family AT5G19790 64.789 7.01e-27 102.0
Eupl7g00365 . 111 212 CBF gene family AT4G13040 68.627 6.88e-46 150.0
Eupl7g00369 . 177 276 CBF gene family AT1G51120 39.216 2.08e-20 89.0
Eupl14g00149 . 82 161 CBF gene family AT1G01250 61.176 1.95e-19 79.7
Eupl14g00026 . 62 325 CBF gene family AT1G68840 52.747 1.13e-79 248.0
Eupl14g00212 . 11 334 CBF gene family AT1G64380 42.9 6.41e-56 182.0
Eupl14g00256 . 9 335 CBF gene family AT4G27950 40.456 4.49e-64 204.0
Eupl7g00835 . 10 197 CBF gene family AT5G44210 40.957 1.10e-36 124.0
Eupl5g01462 . 1 449 CBF gene family AT2G28550 50.794 6.83e-118 353.0
Eupl5g01585 . 62 204 CBF gene family AT4G17500 54.305 2.35e-47 159.0
Eupl5g01230 . 10 184 CBF gene family AT2G36450 60.571 5.97e-55 171.0
Eupl5g01221 . 35 214 CBF gene family AT4G25470 51.366 1.01e-60 187.0
Eupl5g01080 . 52 295 CBF gene family AT1G68840 53.689 3.23e-79 245.0
Eupl7g00450 . 123 387 CBF gene family AT4G13620 44.795 5.53e-73 232.0
Eupl7g00749 . 17 138 CBF gene family AT3G23230 61.94 1.14e-44 142.0
Eupl7g00748 . 17 136 CBF gene family AT3G23230 63.492 2.75e-46 145.0
Eupl7g00747 . 1 214 CBF gene family AT3G23240 57.014 2.36e-76 228.0
Eupl5g00487 . 7 272 CBF gene family AT3G57600 57.244 4.30e-95 280.0
Eupl5g00588 . 31 422 CBF gene family AT2G41710 64.865 1.12e-159 455.0
Eupl5g00435 . 46 568 CBF gene family AT1G51190 50.829 2.09e-145 429.0
Eupl5g02240 . 1 331 CBF gene family AT2G40340 39.566 6.26e-68 215.0
Eupl5g02398 . 12 216 CBF gene family AT4G27950 41.395 4.93e-39 138.0
Eupl14g01272 . 1 300 CBF gene family AT5G47230 43.188 8.81e-62 197.0
Eupl14g01271 . 9 215 CBF gene family AT4G17500 55.459 5.68e-75 229.0
Eupl14g01335 . 87 292 CBF gene family AT2G44940 55.34 6.43e-62 195.0
Eupl2g00014 . 29 199 CBF gene family AT5G44210 42.056 6.59e-45 147.0
Eupl7g00221 . 1 584 CBF gene family AT5G17430 41.019 2.08e-140 422.0
Eupl7g00353 . 117 201 CBF gene family AT4G13040 76.471 1.80e-44 142.0
Eupl3g00154 . 6 107 CBF gene family AT1G22810 63.725 2.57e-44 141.0
Eupl10g00529 . 1 199 CBF gene family AT1G15360 65.672 4.90e-81 238.0
Eupl3g02018 . 29 173 CBF gene family AT1G75490 48.387 7.08e-41 135.0
Eupl9g01031 . 68 558 CBF gene family AT5G57390 54.599 1.15e-163 474.0
Eupl9g00805 . 17 187 CBF gene family AT4G31060 44.186 7.90e-44 142.0
Eupl14g01047 . 87 292 CBF gene family AT2G44940 55.34 6.31e-62 195.0
Eupl8g00815 . 28 220 CBF gene family AT5G51190 49.02 4.95e-54 176.0
Eupl8g00817 . 9 241 CBF gene family AT4G17500 53.64 4.44e-76 231.0
Eupl8g00826 . 46 300 CBF gene family AT1G51120 55.385 6.74e-92 277.0
Eupl14g00593 . 5 87 CBF gene family AT5G19790 63.855 6.17e-31 114.0
Eupl14g00609 . 2 222 CBF gene family AT5G51990 54.741 3.67e-76 227.0
Eupl14g00607 . 2 222 CBF gene family AT5G51990 54.741 4.57e-76 227.0
Eupl14g00606 . 1 216 CBF gene family AT4G25470 56.897 3.99e-79 234.0
Eupl14g00605 . 59 231 CBF gene family AT5G52020 59.538 2.97e-52 167.0
Eupl7g01309 . 4 305 CBF gene family AT5G18560 40.0 3.29e-51 170.0
Eupl7g01440 . 1 243 CBF gene family AT3G16770 46.0 1.47e-61 191.0
Eupl7g01441 . 1 136 CBF gene family AT3G16770 54.412 2.27e-41 142.0
Eupl13g01012 . 182 467 CBF gene family AT4G37750 72.917 5.10e-142 424.0
Eupl10g00314 . 1 174 CBF gene family AT5G25190 66.477 8.16e-73 215.0
Eupl2g00781 . 13 303 CBF gene family AT4G18450 35.314 9.71e-42 144.0
Eupl2g00779 . 36 159 CBF gene family AT3G23240 50.758 1.15e-36 124.0
Eupl12g00548 . 1 215 CBF gene family AT3G23240 56.306 1.20e-73 221.0
Eupl12g00549 . 17 138 CBF gene family AT3G23230 60.656 4.61e-44 143.0
Eupl12g00620 . 8 188 CBF gene family AT1G28360 39.459 1.45e-33 116.0
Eupl11g01416 . 1 343 CBF gene family AT1G13260 61.067 1.84e-143 409.0
Eupl6g00367 . 1 225 CBF gene family AT1G50640 52.321 6.11e-51 163.0
Eupl10g00106 . 11 343 CBF gene family AT1G16060 60.955 2.59e-128 369.0
Eupl12g01411 . 8 77 CBF gene family AT5G19790 67.143 7.47e-26 104.0
Eupl12g01092 . 1 251 CBF gene family AT5G18560 44.882 4.71e-54 178.0
Eupl12g00973 . 1 42 CBF gene family AT3G16770 50.0 5.69e-07 44.7
Eupl12g00972 . 1 109 CBF gene family AT2G47520 57.576 3.82e-40 135.0
Eupl8g00779 . 87 292 CBF gene family AT2G44940 52.657 1.01e-60 191.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl AP2 8.8e-16 CL0081 TF AP2/ERF-ERF