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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01274 ATGTCTGACCATCTTTTTGAGGATATTTTCACTTTGATTCGGCTGGATCCAGATGGTAAAAAGTTCGATAAAGTCTCTCGTATCGAAGCTCGGAGTGAGCAGTTCGATATGCACATGCAGCTAGATGTGAACACAGAGATATATCCTCTCAATGTTGGGGAGAAATTCACGATGGTATTAGCTCCCACACTAAGTTTGGATGGAACTCCTGACACTGGCTATTTTACGCAGGGAGGGAGGAAGTCACTTGCAGACAAATTCGAGTATGTTATGCATGGGAAGTTGTACAAGATCTCAGAGGAAGGTTCAGGAGCCAATGTTAAAGTGGAGATTTATGCTTCATTTGGTGGCCTTCTGATGAGGCTGAGTGGGGACCCCTCCAATGCTGCCAACTTCGAATTAGATCAGAGATTGTTCCTCCTGATGAGGAAAGTCTGA 438 44.52 MSDHLFEDIFTLIRLDPDGKKFDKVSRIEARSEQFDMHMQLDVNTEIYPLNVGEKFTMVLAPTLSLDGTPDTGYFTQGGRKSLADKFEYVMHGKLYKISEEGSGANVKVEIYASFGGLLMRLSGDPSNAANFELDQRLFLLMRKV 145
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01274 145 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 1 145 IPR005570 GO:0001054(PANTHER)|GO:0001055(PANTHER)|GO:0001056(PANTHER)|GO:0003899(InterPro)|GO:0005665(PANTHER)|GO:0005666(PANTHER)|GO:0005736(PANTHER)|GO:0006351(InterPro)
Eupl14g01274 145 SMART rpol8neu 2 144 IPR005570 GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl14g01274 145 PIRSF RPB8 1 145 IPR005570 GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl14g01274 145 Gene3D - 6 145 IPR012340 -
Eupl14g01274 145 SUPERFAMILY Nucleic acid-binding proteins 3 144 IPR012340 -
Eupl14g01274 145 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC3 6 145 - -
Eupl14g01274 145 Pfam RNA polymerase Rpb8 7 144 IPR005570 GO:0003899(InterPro)|GO:0006351(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01274 K03016 DNA-directed RNA polymerases I, II, and III subunit RPABC3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:28904546 Eupl8g01208 Eupl-Chr8:32405683 dispersed