AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01279 ATGGAGCTCTCGACCTCGTCATCTCTCTCCATTCCTTCGCGTTCCCTCTCTCCTCTTTCTTCCTTTCTCTTCAAACCCCAGAAACCCAATTTGAAATTCAGATTCAGCAACTGTAATTTTCTCAAAAACCCGTTAATTTGGCGCCAAAAACAACCGATCAGAGCTGAAAAATCGACCCAGATCGGAGATGGAGGTTTCGTTCTCGAAGACGTTCCCCACCTAACAGAATTTCTCCCCGATTTACCGGCGTACCCAAACCCTTTGCAAAACAGCCCAGCTTATGCAATTGTGAAGCAACAGTTCGTCAACCCGGAAGATGTGGTCGCGCAGAAAATTGTTGTTCAGAAGAATAGTCCTAGAGGAGTACATTTTCGGCGCGCAGGGCCTCGAGAAAAGGTTTATTTCAAGTGGGATGAAGTACGTGCTTGTATAGTGACATGTGGTGGGTTATGCCCTGGGATTAATACGGTGATTAGGGAGATAGTATGTGGGTTGAATTATATGTATGGTGTTGATGACATTCTTGGGATTGAGGGAGGATATAGAGGCTTTTACTCTAGAAATACCATAACTTTAACACCAAAAGTTGTCAATGATATCCACAAACGTGGTGGCACCTTTCTTCGCACTTCACGGGGAGGTCATGACACGAACAAGATTGTTGATAGCATTCAGGACCGGGGGATTAATCAGGTGTACATAATTGGTGGTGATGGTACTCAGAAAGGAGCTGCTGTTATTTACAAGGAAGTAGAAAAACGTGGTCTTCAAGTGGCAGTTGCTGGAATCCCCAAGACTATTGATAATGATATTGCAGTGATCGACAAATCTTTTGGTTTTGACACTGCTGTAGAAGAAGCTCAAAGGGCCATTAATGCTGCACATGTGGAGGCTGAAAGTGTGGAGAATGGCGTTGGTATTGTGAAGCTTATGGGCCGATACAGTGGGTTCATTGCCATGCATGCTACTTTGGCAAGCCGAGATGTGGATTGCTGCTTGATACCGGAGTCTCCATTTTTTCTTGAGGGGCAAGGTGGGCTTTTTGAATTTATTGAACAGCGGCTTAAAGAAAATGGGCATATGGTTATTGTGTTGGCAGAAGGTGCGGGACAGGAGCATGTTGCTCAGTGCATGCAAGCAGTTGATGAGAAAGATGCATCAGGGAACAGGCTACTCCTAGATGTTGGGCTATGGCTATCTCAGAAGATCAAGGATCATTTTACAAAGGACCAGAAGATGGCAGTATATCTCAAGTATATAGATCCAACGTACATGATCCGAGCTATTCCAAGTAACGCATCAGACAACGTCTACTGTACACTTCTGGCGCAGAGTGCTGTTCATGGAGCCATGGCAGGGTACACTGGCTTCACAGTTGGACCTGTGAATAGCAGGCATGCTTACATTCCAATTGCTCGCATGACTGAGACCCAAAACACTATCAAGCTGACAGATAGAATGTGGGCTAGACTTCTTGCCTCGACAAACCAACCAAGCTTCTTAAGCAATGATGAGGTGATGAAAGAAAAAGTTGACAAAGAAACTATTGAGATGATCAACAACATGAGGATTTCTTCAGTGTAG 1584 44.7 MELSTSSSLSIPSRSLSPLSSFLFKPQKPNLKFRFSNCNFLKNPLIWRQKQPIRAEKSTQIGDGGFVLEDVPHLTEFLPDLPAYPNPLQNSPAYAIVKQQFVNPEDVVAQKIVVQKNSPRGVHFRRAGPREKVYFKWDEVRACIVTCGGLCPGINTVIREIVCGLNYMYGVDDILGIEGGYRGFYSRNTITLTPKVVNDIHKRGGTFLRTSRGGHDTNKIVDSIQDRGINQVYIIGGDGTQKGAAVIYKEVEKRGLQVAVAGIPKTIDNDIAVIDKSFGFDTAVEEAQRAINAAHVEAESVENGVGIVKLMGRYSGFIAMHATLASRDVDCCLIPESPFFLEGQGGLFEFIEQRLKENGHMVIVLAEGAGQEHVAQCMQAVDEKDASGNRLLLDVGLWLSQKIKDHFTKDQKMAVYLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAMAGYTGFTVGPVNSRHAYIPIARMTETQNTIKLTDRMWARLLASTNQPSFLSNDEVMKEKVDKETIEMINNMRISSV 527
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01279 527 SUPERFAMILY Phosphofructokinase 75 502 IPR035966 GO:0003872(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 FunFam ATP-dependent 6-phosphofructokinase 136 326 - -
Eupl14g01279 527 Gene3D - 137 326 - -
Eupl14g01279 527 Coils Coil 284 304 - -
Eupl14g01279 527 PIRSF ATP-PFK-TP0108 64 505 IPR012004 GO:0003872(InterPro)|GO:0005524(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PRINTS ATP-dependent phosphofructokinase family signature 300 316 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PRINTS ATP-dependent phosphofructokinase family signature 357 369 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PRINTS ATP-dependent phosphofructokinase family signature 279 297 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PRINTS ATP-dependent phosphofructokinase family signature 261 278 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PRINTS ATP-dependent phosphofructokinase family signature 144 163 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PRINTS ATP-dependent phosphofructokinase family signature 228 244 IPR022953 GO:0003872(InterPro)|GO:0006002(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 71 501 IPR012004 GO:0003872(InterPro)|GO:0005524(InterPro)|GO:0006096(InterPro)
Eupl14g01279 527 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1 50 509 IPR050929 GO:0003872(PANTHER)|GO:0005737(PANTHER)
Eupl14g01279 527 Pfam Phosphofructokinase 142 448 IPR000023 GO:0003872(InterPro)|GO:0006096(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01279 K00850 6-phosphofructokinase 1 [EC:2.7.1.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:29489254 Eupl14g01279 Eupl-Chr14:29086543 dispersed
Eupl Eupl-Chr10:29494789 Eupl14g01279 Eupl-Chr14:29086543 dispersed
Eupl Eupl-Chr14:29086543 Eupl2g00666 Eupl-Chr2:7785993 dispersed
Eupl Eupl-Chr14:29086543 Eupl9g00262 Eupl-Chr9:7996942 transposed