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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01311 ATGGCAGGCCAAGAGGGGTTCGTGGAGGCAGATAACGCTGAAGCTATCATCACTAGAATCGAGCACAAATCCCGAAAGATCGAAAGCTTACTCAAACAGTCGAAACCAGTTGAGGCCCTCAAAACAGCTCTCGAAGGATCACCTCCGAAGACCAAAGATGAAAGATGCAAGTCTGCGATTTGGATAGTGGTGCATCGAGCAATGATGGCTATAAAAGATGTTGACGGGATGTTCTCTTCTTTGGATCCTGAGTACTACGACATCCTCATGAAGTATTTGTATAGAGGCCTGGCTACTGGAGACCGCCCCACATGCGACCAATGCCTCCGGATTCATGAAAAGCTGACTGAGAGAGCTGGTTTGGGATGCATACTGCGTTCCCTTACTGACACTGTTAACACGGTTTGA 408 48.04 MAGQEGFVEADNAEAIITRIEHKSRKIESLLKQSKPVEALKTALEGSPPKTKDERCKSAIWIVVHRAMMAIKDVDGMFSSLDPEYYDILMKYLYRGLATGDRPTCDQCLRIHEKLTERAGLGCILRSLTDTVNTV 135
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01311 135 PANTHER ARP2-3 COMPLEX 16 KD SUBUNIT P16-ARC 8 134 IPR006789 GO:0005737(PANTHER)|GO:0005885(PANTHER)|GO:0005885(InterPro)|GO:0015629(InterPro)|GO:0034314(InterPro)|GO:0034314(PANTHER)|GO:0051015(PANTHER)
Eupl14g01311 135 FunFam Actin-related protein 2-3 complex subunit 5 16 132 - -
Eupl14g01311 135 Pfam ARP2-3 complex 16 kDa subunit (p16-Arc) 12 131 IPR006789 GO:0005885(InterPro)|GO:0015629(InterPro)|GO:0034314(InterPro)
Eupl14g01311 135 Gene3D - 17 132 IPR036743 GO:0005885(InterPro)|GO:0015629(InterPro)|GO:0030833(InterPro)|GO:0034314(InterPro)
Eupl14g01311 135 SUPERFAMILY Arp2-3 complex 16 kDa subunit ARPC5 8 131 IPR036743 GO:0005885(InterPro)|GO:0015629(InterPro)|GO:0030833(InterPro)|GO:0034314(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01311 K05754 actin related protein 2/3 complex, subunit 5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:30178799 Eupl8g00792 Eupl-Chr8:22437482 wgd