AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01313 | ATGTTAGAACAAAGAGACGAGCAGAGAACCTCCTCCTCTGTTACAGAAGGAGAAGGAGAAGAACCACAGAGATGTGCGAAACGTCGCCGTGACGGAGACTCCGACGCCGAAGATGATCGAGATTCCGGCGATCTCCGTTCACCGAAGCGTAGGGCGACATCTCACGACGTCTTGTTCAGGATCGTCGTCCCTTCGAGGCAGATCGGGAGAGTGATAGGTAAAGAAGGTAGTCGGATCAAAAAGATCAGAGAAGAAACCAGAGCCACTATCAAGATCGCCGATGCTGTCGCCCGACACGAAGAACGCGTGATAATTATAAGTTCTAGAGATGACGATCTTGAAATTTCCGATGCTGAGAATGCACTTTATCATATAGCCAGGGTTATACTCAAGGAGAACAATGACAGTGTTGAGCCATCAAGAGTCGGTGCAGGACATGTGGCTGCCAACATGATCCGGCTTTTGATTGCAGGGTCTCAAGCAGGTTGTCTAATTGGGAAGTCTGGTCAAAACATCGAGAAAATAAGGAATAATTCTGGTGCCACAGTCATGATACTGGCTCAAAATCAGCTGCCTCTTTGTGCATCTGCTCATGAATCTGACCGCTTGGTGCAGATATCGGGTGATGTCCCTGAAGTACTGAAAGCCTTGGAGAAAATTGGCTGTCAACTAAGGGAAAACCCCGCCAGAAAAATAATTTCCATCAGACCAACGTACAATTTTAGCTCGAATAGATCAAACCAATCATATCTGGCTCCAACTTCAGCTGATTATGTAACCTCGGAGATGACGATTCCGGAGGCATTGGTTGGTGGCTTGATTGGCAAGTGCGGCTCCAACATTTCGAAGATCAGAAATGAGTCCGGCGCAACAATAAAGGTTAGTGGTGGGAGGGGTGAACAAGACCAGAGGCAAATCCATTTTGGTGGTAGTGCTCAACAGCAGGTAGAATTGGCAAGGAAGTTGGTTGATGAGTACATATATTCTCAGTGA | 993 | 47.13 | MLEQRDEQRTSSSVTEGEGEEPQRCAKRRRDGDSDAEDDRDSGDLRSPKRRATSHDVLFRIVVPSRQIGRVIGKEGSRIKKIREETRATIKIADAVARHEERVIIISSRDDDLEISDAENALYHIARVILKENNDSVEPSRVGAGHVAANMIRLLIAGSQAGCLIGKSGQNIEKIRNNSGATVMILAQNQLPLCASAHESDRLVQISGDVPEVLKALEKIGCQLRENPARKIISIRPTYNFSSNRSNQSYLAPTSADYVTSEMTIPEALVGGLIGKCGSNISKIRNESGATIKVSGGRGEQDQRQIHFGGSAQQQVELARKLVDEYIYSQ | 330 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01313 | 330 | CDD | KH-I | 262 | 324 | - | - | |
| Eupl14g01313 | 330 | ProSiteProfiles | Type-1 KH domain profile. | 56 | 122 | - | - | |
| Eupl14g01313 | 330 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 253 | 323 | - | GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER) | |
| Eupl14g01313 | 330 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 251 | 327 | IPR036612 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | ProSiteProfiles | Type-1 KH domain profile. | 149 | 220 | - | - | |
| Eupl14g01313 | 330 | Pfam | KH domain | 152 | 220 | IPR004088 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | Pfam | KH domain | 260 | 324 | IPR004088 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | Pfam | KH domain | 60 | 111 | IPR004088 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 142 | 231 | IPR036612 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | Gene3D | K Homology domain, type 1 | 52 | 131 | IPR036612 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | CDD | KH-I-PEPPER-rpt2-like | 153 | 225 | - | - | |
| Eupl14g01313 | 330 | SMART | kh-6 | 55 | 130 | IPR004087 | GO:0003676(InterPro) | |
| Eupl14g01313 | 330 | SMART | kh-6 | 148 | 225 | IPR004087 | GO:0003676(InterPro) | |
| Eupl14g01313 | 330 | SMART | kh-6 | 257 | 328 | IPR004087 | GO:0003676(InterPro) | |
| Eupl14g01313 | 330 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Eupl14g01313 | 330 | ProSiteProfiles | Type-1 KH domain profile. | 258 | 323 | - | - | |
| Eupl14g01313 | 330 | Gene3D | K Homology domain, type 1 | 149 | 229 | IPR036612 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | Gene3D | K Homology domain, type 1 | 248 | 330 | IPR036612 | GO:0003723(InterPro) | |
| Eupl14g01313 | 330 | CDD | KH-I-PEPPER-rpt1-like | 56 | 122 | - | - | |
| Eupl14g01313 | 330 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 52 | 127 | IPR036612 | GO:0003723(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01313 | K21444 | poly(rC)-binding protein 3/4 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr14:30243315 | Eupl3g01625 | Eupl-Chr3:43286277 | dispersed | |
| Eupl | Eupl-Chr14:30243315 | Eupl3g00868 | Eupl-Chr3:31045834 | transposed |