AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01330 ATGGGTTTTTGTAGAGTTGCTCAAGTCCACCACCATCGCTACTACCTACAAAACCCCTTCTTCTCAACCTGTGGGAAGTCGACGTCTGTACTACTAAGGAACAAGAAGAGCAGCAGCAAATACTTGTTCTCAGCCAGCACCACAACCAAACCAGTAGTGAGAACACTTGCAACTGCGGCAGCAACAATGGTGAAAGCAATCAGAGTCCATGAGCTTGGTGGACCAGAGGTTCTGAAGTGGGAGGATGTAGAAATCGAAGAGCCAAAAGAGGGTGAGGTCCGAGTGAAAAACAAGGCAATCGGGCTCAACTTCATTGATGTTCATTTCCGCGAAGGAGTTTATAAAGCTGCTACAATGCCTTATACCCCTGGCATGGAAGCAGTTGGGGTGGTGACAGCTGTTGGCCCCGGATTAACTGGAAGGAAAGTTGGGGATGTAGTTGCTTATGCTGGTAAGATGGGCTCATACACCGAAGAACAGATCCTTCCTGCAAGTGTTGTAGTGCCCGTTCCTTCTTCTATAGATCCTATTGTTGCAGCGGCTGTCATGCTTAAGGGTATGACTGCTCAGTACCTACTCCGCCGGTGCTTCAAGGTCGAATCCGGACACACCATCCTTGTCCATGCAGCAGCTGGAGGAGTTGGGTCTTTATTGTGCCAGTGGGGAAATGCCCTTGGTGCCACCATTATTGGAACAGTGTCGACAGAAGAGAAGGCAGCCAAAGCCAAGGCGGATGGATGCCACCATGTTATAAACTACAAGCAAGAGGATTTCATTGCTGCTGTCAAGTCAATAACATCAGGCAAAGGAGTTGATGTTGTCTACGATGCCGTGGGACAAGATACATTCCAGGGATCGTTGGCGTGCTTAAAGACTCGTGGGTACATGGTGAGCTATGGGCAGTCATCAGGCATACCAGACCCAGTTCCATTGTCGGCCCTCCAGGCGAAATCTTTGTTCTTAACGAGGCCTGGGCTCGTGCACTACACAGAAACACAAGATGAGCTACTGGAAGCTGCCGGAGAAGTGTTTGCCAATGTTGCATCAGGTGTCTTGCAGGTCCATGTTAACCACACGTACCCTCTGTCACAAGCAGCTCAGGCTCACGCAGACCTCGAGGGTCGGAAAACAACTGGTTCTGTAGTGCTGATACCAGATGGTGTTGAGCTGTAA 1173 49.79 MGFCRVAQVHHHRYYLQNPFFSTCGKSTSVLLRNKKSSSKYLFSASTTTKPVVRTLATAAATMVKAIRVHELGGPEVLKWEDVEIEEPKEGEVRVKNKAIGLNFIDVHFREGVYKAATMPYTPGMEAVGVVTAVGPGLTGRKVGDVVAYAGKMGSYTEEQILPASVVVPVPSSIDPIVAAAVMLKGMTAQYLLRRCFKVESGHTILVHAAAGGVGSLLCQWGNALGATIIGTVSTEEKAAKAKADGCHHVINYKQEDFIAAVKSITSGKGVDVVYDAVGQDTFQGSLACLKTRGYMVSYGQSSGIPDPVPLSALQAKSLFLTRPGLVHYTETQDELLEAAGEVFANVASGVLQVHVNHTYPLSQAAQAHADLEGRKTTGSVVLIPDGVEL 390
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01330 390 Pfam Zinc-binding dehydrogenase 213 318 IPR013149 -
Eupl14g01330 390 Gene3D - 73 379 - -
Eupl14g01330 390 SUPERFAMILY GroES-like 63 206 IPR011032 -
Eupl14g01330 390 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 335 IPR036291 -
Eupl14g01330 390 SMART PKS-ER-names-mod 73 383 IPR020843 GO:0016491(InterPro)
Eupl14g01330 390 FunFam Quinone oxidoreductase 1 185 329 - -
Eupl14g01330 390 Pfam Alcohol dehydrogenase GroES-like domain 90 171 IPR013154 -
Eupl14g01330 390 Gene3D - 185 329 - -
Eupl14g01330 390 PANTHER QUINONE OXIDOREDUCTASE PIG3-RELATED 65 385 - GO:0003960(PANTHER)|GO:0005829(PANTHER)|GO:0016651(PANTHER)|GO:0017091(PANTHER)|GO:0070402(PANTHER)
Eupl14g01330 390 CDD QOR2 65 385 IPR047618 GO:0003960(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01330 K00344 NADPH:quinone reductase [EC:1.6.5.5]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:17664171 Eupl14g01330 Eupl-Chr14:30849195 dispersed
Eupl Eupl-Chr14:17634617 Eupl14g01330 Eupl-Chr14:30849195 wgd