AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01345 ATGGAGGAACAAGCCTCTAGCCTTACAACTGCTGCTCCTAGGAAGGTGAGATTTAAACCGAAAGTTCCTACTCACAAAACACCCAAATCTGCTGAAAACAAAATTGAAGGGCTTGAGGATACAGAAGCTGCTCAGACCAGGGAGTTGCTGCGGCATGTCAATGAAGGTTCTGGGAGGCGAGGACCTAAAGTTGAAAGGAAATCGGCACCAGTGCAAGTTGCATTTGGTCATGGAGGTGGATCGAGTTTCATAAGGTCATTTGGCAGGACTAGTAATTCCCGGAGTGGATCCGGACCTCAAAGTCCTGTATTTGATGATGGCCCCAATGCATCAGATGAGAAGAAGAAGAAAGAATATGTTGAACCCTGGGATTACTACAGTTACTATCCTGTTACCCTTCCTCTAAGGAGGCCGTACTCAGGAAACCCAGAACTTCTTGATGAGAAGGAATTTGGGGAAGCTTCGGCGAACTTGGATTACGATGAGAGTTATATAAATCCAGCCGCAGAGCTCGGTCTAATGGAGGAAAGTGAAGAAGCAAGGATGTTCTTTCTTCAGCTACCTGCTTCTCTACCTTTAGTTAAGCGATCAGCTAGTGTGAAGGGGAAAGAGAAAGTTGACAGCTTGAAACCATCCAGGGATATGCGTCCTCCAGAGAAGGGATGCAGCTTGGAAGAGTTGCCTGCGGGCTTGATGGGCAAAATGATGGTGTACAGGAGTGGTGCTATCAAGTTGAAGCTTGGAGAAACCCTTTATGATGTTTCCCCTGGTTCAGATTGTGTATTTGCCCAGGATGTTGCAGCAATCAATACAGAAGACAAACACTGTTGCATCCTTGGGGAGCTCAACAAGCGCGCCATCGTAACCCCGGATGTCGATTCCCTCGTAAATAGTGTGATTGACTTGGGTTAA 912 46.82 MEEQASSLTTAAPRKVRFKPKVPTHKTPKSAENKIEGLEDTEAAQTRELLRHVNEGSGRRGPKVERKSAPVQVAFGHGGGSSFIRSFGRTSNSRSGSGPQSPVFDDGPNASDEKKKKEYVEPWDYYSYYPVTLPLRRPYSGNPELLDEKEFGEASANLDYDESYINPAAELGLMEESEEARMFFLQLPASLPLVKRSASVKGKEKVDSLKPSRDMRPPEKGCSLEELPAGLMGKMMVYRSGAIKLKLGETLYDVSPGSDCVFAQDVAAINTEDKHCCILGELNKRAIVTPDVDSLVNSVIDLG 303
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01345 303 MobiDBLite consensus disorder prediction 84 104 - -
Eupl14g01345 303 MobiDBLite consensus disorder prediction 1 115 - -
Eupl14g01345 303 Pfam RNA polymerase III RPC4 180 292 IPR007811 GO:0003677(InterPro)|GO:0005666(InterPro)|GO:0006383(InterPro)
Eupl14g01345 303 MobiDBLite consensus disorder prediction 25 66 - -
Eupl14g01345 303 PANTHER DNA-DIRECTED RNA POLYMERASE III 2 300 IPR007811 GO:0003677(InterPro)|GO:0005666(PANTHER)|GO:0005666(InterPro)|GO:0006383(InterPro)|GO:0042797(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01345 K03026 DNA-directed RNA polymerase III subunit RPC4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:31394554 Eupl9g00563 Eupl-Chr9:13818556 dispersed
Eupl Eupl-Chr14:17120820 Eupl14g01345 Eupl-Chr14:31394554 wgd