AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl14g01352 | ATGATGGAACAATATAAAGGAGCAGCATTTGGGGAGCTCAGCCCTCATGTTTTTGCAGTTGCAGATGTTTCATACAGGGCAATGATCAATGAAGGGAAGAGCAACTCTATTCTGGTTAGTGGAGAAAGTGGTGCTGGTAAAACGGAAACAACAAAGATGCTCATGAGATATCTTGCATACTTGGGTGGGCGATCTGGTATAGAAGGAAGGACAGTTGAACAACAAGTTTTGGAATCCAATCCAGTTCTCGAAGCATTTGGGAACGCCAAAACTGTAAGAAACAACAACTCAAGTCGTTTTGGTAAATTTGTTGAAATCCAATTTGACAAGAATGGGAGGATATCTGGGGCAGCTATTAGAACTTACCTACTTGAAAGGTCTCGTGTTTGCCAAATTTCCGATCCTGAGAGAAACTACCATTGCTTTTACCTTCTTTGTTCTGCACCGCCTGAGGATGTTGAGAAATATAAGTTGGGGAACCCTAAATCGTTCCATTACCTAAACCAATCTAATTGCTATGAGCTGGATGGAGTAAATGATTCCCGTGAATATCTTGCAACCAGAAGGGCTATGGATATAGTTGGAATCAGTGAGCATGAACAGGAGGCAATTTTCAGGGTGGTGGCAGCAATTCTTCATCTTGGTAATATTGATTTTGCAAAGGGAAAGGAAATAGACTCCTCTGTCATTAAGGATGAAAAGTCTCGGTTCCATCTTAAAATGACAGCTGAACTTCTTATGTGTGATGCCCAGAGCTTGGAAGATGCACTGATTAAACGTGTAATGGTGACACCAGAAGAAGTTATCACAAGAACTCTTGATCCTGGTTCAGCAGTTGTTAGCAGGGATGGTTTAGCTAAAACAGTATACTCCCGCCTATTCGATTGGCTGGTGGATAAAATTAACATTTCGATTGGGCAGGATCCAAACTCAAAATCAATAATTGGGGTTCTTGACATTTACGGTTTTGAAAGCTTTAAGTGCAATAGTTTTGAGCAGTTCTGTATCAATTTTACAAATGAGAAGCTGCAACAACATTTTAACCAGCATGTCTTTAAAATGGAGCAGGAAGAATATACGAAAGAGGAAATCAATTGGAGCTACATAGAGTTTGTTGACAACCAAGATGTGTTGGATCTGATTGAGAAGAAACCTGGAGGAATTATTGCGCTTCTCGATGAAGCATGCATGTTTCCCAAGTCCACACATGAAACATTTGCCCAGAAGTTGTATCAGACTTTTAAAAATAACAAGCGCTTTATGAAACCAAAGCTTTCTCGAACTGATTTTACTATATCTCACTATGCAGGGGAGGTGACATATCAAGCTAATCAGTTTCTAGACAAAAACAAAGATTATGTGGTGGCAGAACATCAAGAGTTATTGATTGCGTCAAAATGCCCCTTTGTGGCGGGTTTATTTCCTCCACTTCCAGAGGAATCATCGAAGTCATCCAAATTTTCTTCCATCGGATCACGCTTTAAGCTACAACTTCAATCTTTGATGGAGACCTTGAATTCAACGGAGCCTCATTACATTAGATGTGTGAAGCCAAACAATGTCCTCAAACCTGCTATTTTTGAGAACTTCAACATCATCCAACAGTTACGCTGTGGTGGTGTTCTTGAGGCAATTAGGATCAGTTGTGCTGGATATCCTACTAGACGAACATTTTATGAATTTCTTCATCGTTTTGGTGTCCTTGCTCCAGAAGTTTTGGAAGGAAACCATAATGAAAAGGTTGCGTGCCAAATGATCCTGAATAAAAAGGGATTGAAAGGTTATCAGATAGGCAAAACAAAGGCCTTCCTGAGAGCTGGTCAGATGGCTGAGTTGGATGCACGAAGAGCAGAGGTACTGGGCAATGCAGCTAGGGCTATTCAAAGGCAAATTCGTACATATATTGCTCGTAAGGAGTTCATCTCATTACGCAAGGCTGCCATTCATTTGCAATCTCATTGGAGAGATCGAATGCCCACTTATTTTGGAGGTTTAGGGCTGTTATTAGTAGTCTGGAGAGGCAATTTCGTCGAGCTCTATCTCCCTCACGGTGAAGAAAAGCTTCGAATAATGGTGACCTAG | 2082 | 40.92 | MMEQYKGAAFGELSPHVFAVADVSYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGIEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCSAPPEDVEKYKLGNPKSFHYLNQSNCYELDGVNDSREYLATRRAMDIVGISEHEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLKMTAELLMCDAQSLEDALIKRVMVTPEEVITRTLDPGSAVVSRDGLAKTVYSRLFDWLVDKINISIGQDPNSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKNNKRFMKPKLSRTDFTISHYAGEVTYQANQFLDKNKDYVVAEHQELLIASKCPFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNSTEPHYIRCVKPNNVLKPAIFENFNIIQQLRCGGVLEAIRISCAGYPTRRTFYEFLHRFGVLAPEVLEGNHNEKVACQMILNKKGLKGYQIGKTKAFLRAGQMAELDARRAEVLGNAARAIQRQIRTYIARKEFISLRKAAIHLQSHWRDRMPTYFGGLGLLLVVWRGNFVELYLPHGEEKLRIMVT | 693 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl14g01352 | 693 | Gene3D | Kinesin motor domain | 1 | 547 | IPR036961 | - | |
| Eupl14g01352 | 693 | Gene3D | - | 620 | 659 | - | - | |
| Eupl14g01352 | 693 | ProSiteProfiles | IQ motif profile. | 622 | 646 | - | - | |
| Eupl14g01352 | 693 | FunFam | Myosin 2 | 197 | 313 | - | - | |
| Eupl14g01352 | 693 | CDD | MYSc-Myo11 | 1 | 605 | IPR036018 | - | |
| Eupl14g01352 | 693 | Gene3D | - | 137 | 195 | - | - | |
| Eupl14g01352 | 693 | Gene3D | - | 552 | 615 | - | - | |
| Eupl14g01352 | 693 | Gene3D | - | 324 | 508 | - | - | |
| Eupl14g01352 | 693 | PANTHER | MYOSIN | 1 | 657 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Eupl14g01352 | 693 | FunFam | Class V myosin | 324 | 462 | - | - | |
| Eupl14g01352 | 693 | FunFam | Myosin heavy chain | 137 | 192 | - | - | |
| Eupl14g01352 | 693 | ProSiteProfiles | Myosin motor domain profile. | 1 | 617 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Eupl14g01352 | 693 | SMART | MYSc-2a | 1 | 618 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Eupl14g01352 | 693 | FunFam | Myosin XI D | 552 | 615 | - | - | |
| Eupl14g01352 | 693 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 658 | IPR027417 | - | |
| Eupl14g01352 | 693 | Pfam | IQ calmodulin-binding motif | 623 | 640 | IPR000048 | GO:0005515(InterPro) | |
| Eupl14g01352 | 693 | Pfam | Myosin head (motor domain) | 1 | 605 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Eupl14g01352 | 693 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 197 | 486 | - | - | |
| Eupl14g01352 | 693 | PRINTS | Myosin heavy chain signature | 367 | 395 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Eupl14g01352 | 693 | PRINTS | Myosin heavy chain signature | 34 | 59 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Eupl14g01352 | 693 | PRINTS | Myosin heavy chain signature | 81 | 108 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Eupl14g01352 | 693 | PRINTS | Myosin heavy chain signature | 314 | 342 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl14g01352 | K10357 | myosin V |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr14:31672985 | Eupl1g00658 | Eupl-Chr1:23738930 | dispersed | |
| Eupl | Eupl-Chr14:31672985 | Eupl9g00511 | Eupl-Chr9:12520776 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Eupl6g00778 | . | 64 | 288 | Myosins gene family | AT3G19960 | 63.755 | 1.32e-90 | 292.0 | |
| Eupl6g00777 | . | 188 | 1030 | Myosins gene family | AT5G54280 | 59.838 | 0.0 | 1012.0 | |
| Eupl2g00136 | . | 62 | 1160 | Myosins gene family | AT3G19960 | 62.589 | 0.0 | 1407.0 | |
| Eupl4g02186 | . | 1 | 1165 | Myosins gene family | AT3G19960 | 76.658 | 0.0 | 1852.0 | |
| Eupl12g00364 | . | 1 | 1500 | Myosins gene family | AT1G04160 | 73.844 | 0.0 | 2368.0 | |
| Eupl6g00525 | . | 748 | 881 | Myosins gene family | AT4G28710 | 31.21 | 3.32e-10 | 63.2 | |
| Eupl4g01673 | . | 583 | 638 | Myosins gene family | AT1G50360 | 73.214 | 2.90e-19 | 87.8 | |
| Eupl9g00587 | . | 9 | 1509 | Myosins gene family | AT4G33200 | 74.554 | 0.0 | 2318.0 | |
| Eupl9g00511 | . | 19 | 1540 | Myosins gene family | AT5G20490 | 82.472 | 0.0 | 2626.0 | |
| Eupl1g00658 | . | 2 | 1552 | Myosins gene family | AT2G31900 | 76.839 | 0.0 | 2496.0 | |
| Eupl10g01170 | . | 157 | 1541 | Myosins gene family | AT5G20490 | 81.138 | 0.0 | 2323.0 | |
| Eupl7g00797 | . | 216 | 1526 | Myosins gene family | AT1G54560 | 78.763 | 0.0 | 2194.0 | |
| Eupl14g01352 | . | 130 | 787 | Myosins gene family | AT5G20490 | 86.474 | 0.0 | 1204.0 | |
| Eupl5g00222 | . | 1466 | 1527 | Myosins gene family | AT1G54560 | 75.806 | 2.04e-29 | 106.0 |