AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00003 ATGCAACGACTCAGATCGAAAATTGTCTCGTGGCCATTGGGGTTAGGGAGATTGAATTTTTATTCGGTTAATGCTTGTGGGTTCGAACTCAATCACGAAAGTAGTTTTGCTTTTTCTTCTGGAAGTAGCAATGCCCAAGATTTAATTAGTGATGATTCGGACAGGTCCCAGTCGAAGACATATGCAACTTCTTGTGCTAAGTTGTTGGAAGATCCACCGAAAGATAGTCCAGTTTCCGATATGTTAGTTGATTCGTTCGGAAGGCTGCACACTTACTTGAGGATCTCCTTGACAGAGCGTTGCAATCTCCGGTGCCAGTACTGTATGCCTGCTGAGGGTGTGGAGCTCACTCCTAGTCCTCAACTTCTGTCACAGAATGAGATTGTTCGCTTGGCAAATCTCTTTGTCAGCTCTGGGGTGGATAAGATTCGATTGACTGGCGGGGAGCCAACCACTAGGAAAGATATTGAAGATATATGCTTACAGTTGTCTAACTTGAAAGGGCTGAAAACATTGGCAATGACTACAAATGGAATTACTCTTGCAAGAAAGCTTCCAAAGTTGAAAGAATGTGGGCTGAATTTGGTGAATATTAGTTTAGACACATTGGTAGCAGCAAAGTTTGAGTTTATGACAAGGCGTAAAGGGCACGGAAGGGTTATGGAGTCGATTAATACTGCTATAGACCTTGGATACAATCCTGTTAAAGTGAATTGTGTTGTAATGCGTGGGTTCAATGATGATGAGATCTGTGATTTCGTAGAATTAACACGTGAGAAACCAATCAATGTTCGGTTCATTGAGTTCATGCCTTTTGATGGAAATGTATGGAATGTCAAGAAACTTGTACCCTATTCGGAAATGATGGATAGAGTGGTACAAAGGTTTAAGGGCCTAAAGAGACTTCAGGATCACCCCACAGATACAGCCAAGAATTTCAGGGTAGATGGGCATTATGGTACTGTTTCTTTTATCACATCGATGACTGAGCATTTTTGTGCTGGTTGCAATAGATTGCGACTTTTAGCTGACGGGAACTTCAAAGTATGTCTCTTTGGTCCTTCAGAGGTTAGCTTAAGAGATCCCCTTCGTAATGGTGTTGATGATCAGGGGCTGAAGGAAATAATTGAAGCAGCGGTCAAGAGGAAGAAAGCTGCTCATGCTGGAATGTTTGACATTGCAAAGACGACAAATAGACCTATGATACATATTGGTGGCTGA 1221 42.18 MQRLRSKIVSWPLGLGRLNFYSVNACGFELNHESSFAFSSGSSNAQDLISDDSDRSQSKTYATSCAKLLEDPPKDSPVSDMLVDSFGRLHTYLRISLTERCNLRCQYCMPAEGVELTPSPQLLSQNEIVRLANLFVSSGVDKIRLTGGEPTTRKDIEDICLQLSNLKGLKTLAMTTNGITLARKLPKLKECGLNLVNISLDTLVAAKFEFMTRRKGHGRVMESINTAIDLGYNPVKVNCVVMRGFNDDEICDFVELTREKPINVRFIEFMPFDGNVWNVKKLVPYSEMMDRVVQRFKGLKRLQDHPTDTAKNFRVDGHYGTVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRNGVDDQGLKEIIEAAVKRKKAAHAGMFDIAKTTNRPMIHIGG 406
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00003 406 CDD Radical-SAM 95 295 - -
Eupl1g00003 406 Gene3D Aldolase class I 79 406 IPR013785 -
Eupl1g00003 406 SUPERFAMILY Radical SAM enzymes 82 368 - -
Eupl1g00003 406 ProSitePatterns moaA - nifB - pqqE family signature. 97 108 IPR000385 GO:0003824(InterPro)|GO:0046872(InterPro)|GO:0051539(InterPro)
Eupl1g00003 406 SMART MiaB 91 294 IPR006638 GO:0003824(InterPro)|GO:0051536(InterPro)
Eupl1g00003 406 SFLD dehydrogenase like 79 406 - -
Eupl1g00003 406 CDD Twitch-MoaA 328 397 IPR010505 GO:0006777(InterPro)|GO:0051539(InterPro)
Eupl1g00003 406 Hamap GTP 3',8-cyclase [moaA]. 82 406 IPR013483 GO:0006777(InterPro)|GO:0046872(InterPro)
Eupl1g00003 406 PANTHER MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A 57 406 IPR050105 GO:0006777(PANTHER)|GO:0061798(PANTHER)|GO:0061799(PANTHER)
Eupl1g00003 406 Pfam Molybdenum Cofactor Synthesis C 262 388 IPR010505 GO:0006777(InterPro)|GO:0051539(InterPro)
Eupl1g00003 406 Pfam Radical SAM superfamily 95 256 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Eupl1g00003 406 ProSiteProfiles Radical SAM core domain profile. 85 308 IPR007197 GO:0003824(InterPro)|GO:0051536(InterPro)
Eupl1g00003 406 FunFam molybdenum cofactor biosynthesis protein 1 79 405 - -
Eupl1g00003 406 Pfam 4Fe-4S single cluster domain 99 210 - -
Eupl1g00003 406 NCBIfam GTP 3',8-cyclase MoaA 82 406 IPR013483 GO:0006777(InterPro)|GO:0046872(InterPro)
Eupl1g00003 406 SFLD cyclic pyranopterin phosphate synthase (MoaA-like) 79 406 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00003 K03639 GTP 3',8-cyclase [EC:4.1.99.22]