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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00010 ATGAAGATGAGTGGTATTGGGGATAATAAAAGCCCAAGCAGCAGACTTGGTGTTATAAGCTCTCATTTGTTTTCGCATCCTTCAATGGCTTCTGAGAAAGAAGCGGCTCTTGCAGCTGTTCCATCCGACTCTCCCACCATATTTGACAAAATTATAAAGAAGGAAATCCCTTGCAACGTTGTTTATGAGGATGATAAGGTTCTTGCGTTCAGGGACATAGCTCCCCAAGCTCCCACACACATTTTAATTATCCCCAAAGTCAAGGATGGATTAACTGGTCTCTCTAAGGCGGAGGATAGGCACTGTGAGATTCTTGGCCAGCTTTTGTATACTGCCAAGCTCATTGCTAAACAGGAAGGACTCGAAGACGGTTTCAGGATTGTCATCAACGATGGGCCCAATGGATGTCAATCTGTCTATCACCTTCACATCCACCTTCTTGGGGGACGACAAATGAACTGGCCTCCTGGTTAA 474 45.15 MKMSGIGDNKSPSSRLGVISSHLFSHPSMASEKEAALAAVPSDSPTIFDKIIKKEIPCNVVYEDDKVLAFRDIAPQAPTHILIIPKVKDGLTGLSKAEDRHCEILGQLLYTAKLIAKQEGLEDGFRIVINDGPNGCQSVYHLHIHLLGGRQMNWPPG 157
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00010 157 PRINTS Histidine triad family signature 47 63 IPR001310 -
Eupl1g00010 157 PRINTS Histidine triad family signature 68 86 IPR001310 -
Eupl1g00010 157 PRINTS Histidine triad family signature 137 147 IPR001310 -
Eupl1g00010 157 FunFam Histidine triad nucleotide-binding protein 1 29 157 - -
Eupl1g00010 157 CDD PKCI-related 45 149 - -
Eupl1g00010 157 SUPERFAMILY HIT-like 43 156 IPR036265 -
Eupl1g00010 157 Pfam HIT domain 53 151 IPR011146 GO:0003824(InterPro)
Eupl1g00010 157 Gene3D - 27 157 IPR036265 -
Eupl1g00010 157 ProSiteProfiles HIT domain profile. 47 157 IPR011146 GO:0003824(InterPro)
Eupl1g00010 157 ProSitePatterns HIT domain signature. 130 148 IPR019808 -
Eupl1g00010 157 PANTHER HISTIDINE TRIAD HIT PROTEIN 27 157 IPR001310 GO:0005737(PANTHER)|GO:0006790(PANTHER)|GO:0009150(PANTHER)|GO:0016787(PANTHER)|GO:0047627(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00010 K02503 histidine triad (HIT) family protein [EC:3.9.1.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197776 Eupl Eupl1g00010 Eupl-Chr1:650991 Eupl6g01750 Eupl-Chr6:36212000