AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00011 ATGTGGAAGCTTAAGATTGGCGATAGTGGTGGCCCTTATAGCCAATATCTTTTCAGCACCAACAATTTCGTTGGGAGACAGACTTGGGAGTTTGATCCCGACGCTGGAACACCCGAAGAGCGAGCTGAAGTTGAAAAGGCTCGCCAGGAGTTTCGCAAAAACCGGTTTCAAGTAAAGCCTTGCAGCGATGTTTTATTGCGATTGCAGATGTTGAAAGAGAATAAAGATAAATTCAACCTGAGTATACACCCAGTAAAGGTAGGAGACAACGAGGAAGTAACCTATGAGGCACTCACCACCACATTGAGGAGGGCCGTTCAATTCTTTTCGGCTATGCAGACAAGCGACGGGCATTGGGCCGCCGAAATTGGGGGCCCCTTGTTTTTCATGCCTCCCTTTGTCTTTGCGCTATACATTACTGGAACACTTGATATTATGCTATCGCCGGAACATAAAAAGGAGACTCTACGCTACATGTACTATCATCAGAATGAAGATGGAGGTTGGGGATTTCATATTGAGGGTCACAGCACCATGTTCGGTACGATACTTAACTACATTTGTATGCGTATGCTAGGAGAAGGGCCTGATGGTGGTGAAGACAATGCGTGTGCAAGAGGCCGAAATTGGATCCTTGATCATGGTGGTGCAACATCGATACCTTCTTGGGGAAAGACTTGGCTTTCGATACTTGGAGTGTATGAGTGGTCAGGATGCAACCCAATGCCCCCGGAGTTTTGGCTTTTTCCTTCCTTTCTCCCTATGCATCCAGCAAAGATGTGGTGTTATTGTCGCTCTGTTTACATGCCCATGTCATATTTATATGGGAAGCGATTTGTGGGCCCAATCACAGATCTCATTCTAGCGTTGAGAGAAGAGCTTTATGTTCAACCTTATCATGAAATAAATTGGAATAAAACACGACATTTGTGTGCAAAGGAGGATCTTTACTACCCCCATCCCCTGATACAAAATTTAATATGGGATTCTCTTCACTTGTTTACTGAGCCTCTTCTGACACGGTGGCCCTTATCCAAGTTTAGAGAGAGAGCTCTTCAAGTAACTATGAAGCACATTCATTATGAAGATGAAAATAGTCGATACATGACCCCCGGATCTGTTGAAAAGCCATTATTTATGCTTGCTTGTTGGTCGGAAGATCCAAATTCGGATGCATTCAAGAAACATCTGGCTAGGGTCCCAGATTACTTATGGGTTGCTGAAGATGGAATGAGAATGCAGAGTTTTGGTAGTCAGAATTGGGATACTGCTTTTTCCATTCAAGCACTCATCGCGAGTAATCTTACCGAAGAAATTGGACCTATTCTTAAGAAAGGACATGATTACATAAAAAAATCACAGGTTGAAGATAATCCATCTGGTGACTTTCAAAGCATGTACCGTCACATTTCTAAAGGGTCGTGGACTTTCTCAGATCAAGATCATGGGTGGCAAGTCTCCGATTGCACAGCAGAAGGACTAATGGTTTGTCTCTTGTTCTCACAAATGCCCCCTGAAATTGTTGGGGAAAAAATGGAACCAAAGCGGCTATATGATTCTGTGAACGTCATTCTTTCCCTACAAAGTGAAAATGGCGGTTTACCAGCCTGGGAGCCAGTAACAGGACATGACTGGTTGGAGGTGCTCAATCCTACAGAATTTTTTGAGGGCATTGTTATTGAACATGAATATGTTGAATGCACTGCATCGGCACTCCAAGCTTTAGTGTTTTTTCAGAAATTATATCCTGGTCATCGAAAGAAAGAAATAGAAAGTTTTATCATAAAAGCAGTGAATTACATTGAAGATAAACAAATGCCTGATGGATCGTGGTATGGTAATTGGGGAATTTGCTTCATCTATGGCACATGGTTTGCACTACGAGGGCTAGTAGCTGTTGGGAAGACCTTTAACAATAGCTTGACTGTCCGTAAAGCTTGTGAGTTTCTATTATCAGCACAACAATCTATTGGTGGTTGGGGAGAAAGTTATCTTTCATGCCCAGACAAGGTATTTAGACCTCTAGAAGGTAATCGATCAAATTTGGTACATACTGCATGGGCTATGTTGGGTCTTATTAATGCAGGGCAGGCTGAGAGAGATCCGACACCTTTGCATCGTGCAGCAAAGATACTAATTAATATGCAGATGGAAAATGGTGATTTTCCCCAACAGGAAATTACAGGAGTTTTCATGAAGAACTGTATGCTACACTATGCAGCATTTAGAAACATTTTCCCATTATGGGCTCTTGGAGAATATTGTCGACGGGTTCCATTGTCTTCTAAAAACCTTTAA 2298 42.56 MWKLKIGDSGGPYSQYLFSTNNFVGRQTWEFDPDAGTPEERAEVEKARQEFRKNRFQVKPCSDVLLRLQMLKENKDKFNLSIHPVKVGDNEEVTYEALTTTLRRAVQFFSAMQTSDGHWAAEIGGPLFFMPPFVFALYITGTLDIMLSPEHKKETLRYMYYHQNEDGGWGFHIEGHSTMFGTILNYICMRMLGEGPDGGEDNACARGRNWILDHGGATSIPSWGKTWLSILGVYEWSGCNPMPPEFWLFPSFLPMHPAKMWCYCRSVYMPMSYLYGKRFVGPITDLILALREELYVQPYHEINWNKTRHLCAKEDLYYPHPLIQNLIWDSLHLFTEPLLTRWPLSKFRERALQVTMKHIHYEDENSRYMTPGSVEKPLFMLACWSEDPNSDAFKKHLARVPDYLWVAEDGMRMQSFGSQNWDTAFSIQALIASNLTEEIGPILKKGHDYIKKSQVEDNPSGDFQSMYRHISKGSWTFSDQDHGWQVSDCTAEGLMVCLLFSQMPPEIVGEKMEPKRLYDSVNVILSLQSENGGLPAWEPVTGHDWLEVLNPTEFFEGIVIEHEYVECTASALQALVFFQKLYPGHRKKEIESFIIKAVNYIEDKQMPDGSWYGNWGICFIYGTWFALRGLVAVGKTFNNSLTVRKACEFLLSAQQSIGGWGESYLSCPDKVFRPLEGNRSNLVHTAWAMLGLINAGQAERDPTPLHRAAKILINMQMENGDFPQQEITGVFMKNCMLHYAAFRNIFPLWALGEYCRRVPLSSKNL 765
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00011 765 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 341 759 IPR008930 -
Eupl1g00011 765 Pfam Squalene-hopene cyclase N-terminal domain 103 405 IPR032697 -
Eupl1g00011 765 PANTHER TERPENE CYCLASE-MUTASE FAMILY MEMBER 1 761 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Eupl1g00011 765 Gene3D - 35 234 - -
Eupl1g00011 765 FunFam Terpene cyclase-mutase family member 392 761 - -
Eupl1g00011 765 ProSitePatterns Terpene synthases signature. 608 622 IPR002365 GO:0016866(InterPro)
Eupl1g00011 765 SFLD Prenyltransferase Like 2 88 757 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Eupl1g00011 765 CDD SQCY-1 102 754 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Eupl1g00011 765 Gene3D - 391 763 - -
Eupl1g00011 765 FunFam Uncharacterized protein 123 352 - -
Eupl1g00011 765 Pfam Squalene-hopene cyclase C-terminal domain 420 755 IPR032696 -
Eupl1g00011 765 NCBIfam squalene-oxidosqualene cyclases 101 754 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Eupl1g00011 765 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 125 413 IPR008930 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00011 K15813 beta-amyrin synthase [EC:5.4.99.39]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197777 Eupl Eupl1g00011 Eupl-Chr1:665582 Eupl1g00032 Eupl-Chr1:1089608