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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00013 ATGGCCTCAGTGGAGGGAGAGAGCTCACCAGCTACTCTTGCATTTATGGAGCTTGCTATGCAGCAGGCAAAGCTTGCCTTAGACAGCCTTGAAGTGCCAATTGGCTGTGTGATTGTCGAGGATGGAAAGGTCATTGCCTCAGGGAGAAACCGAACTACAGAGACACGAAATGCTACAAGACATGCGGAGATGGAGGCCATTGATGTTCTGCTTGAACAGTGGCAAAAGATTGGACTTTCGGAGACAGAAGTCGCAGGAAAATTTTCAAGATGCAATCTTTATGTTACATGTGAACCATGTATAATGTGTGCAGCAGCCTTATCGATTCTTGGAATAAAGTCCGTATATTATGGCTGTGCTAATGATAAATTTGGAGGGTGTGGATCAATCTTGTCATTACATTCAAGTAGCTCTGAACAGCTTAATAGTGGTGGGGTTTCACAAGGGACGGGTTTCAAATGTACTGGAGGAATAATGGCATCAGAAGCTGTTTCTCTGTTACGAAGTTTCTATGAACAAGGAAACCCCAACGCTCCAAAGCCTCATAGGCCGGTTCAGGTATCACCATGA 570 44.91 MASVEGESSPATLAFMELAMQQAKLALDSLEVPIGCVIVEDGKVIASGRNRTTETRNATRHAEMEAIDVLLEQWQKIGLSETEVAGKFSRCNLYVTCEPCIMCAAALSILGIKSVYYGCANDKFGGCGSILSLHSSSSEQLNSGGVSQGTGFKCTGGIMASEAVSLLRSFYEQGNPNAPKPHRPVQVSP 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00013 189 Gene3D Cytidine Deaminase, domain 2 8 184 - -
Eupl1g00013 189 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 10 138 IPR002125 -
Eupl1g00013 189 Pfam MafB19-like deaminase 14 132 IPR028883 GO:0002100(InterPro)|GO:0008251(InterPro)
Eupl1g00013 189 FunFam tRNA-specific adenosine deaminase 2 8 184 - -
Eupl1g00013 189 CDD nucleoside-deaminase 16 128 - -
Eupl1g00013 189 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 61 107 IPR016192 GO:0008270(InterPro)|GO:0016787(InterPro)
Eupl1g00013 189 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 5 177 - GO:0002100(PANTHER)|GO:0052717(PANTHER)
Eupl1g00013 189 SUPERFAMILY Cytidine deaminase-like 12 176 IPR016193 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00013 K15441 tRNA-specific adenosine deaminase 2 [EC:3.5.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197778 Eupl Eupl1g00013 Eupl-Chr1:746580 Eupl4g01466 Eupl-Chr4:23839114