AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00017 ATGGATGAATCTGAATTTGAACAACACAATATGGAAATGGCAGCTACGGCTGCTGCTGCCTACTATTTTTTGAGATATTTGAACAAGAAGCCAAGGCGGAGTCCAGCAGTTCATAGTGCTACATATATGGATGAAATTCTTAGAGGGCATCCTAACCAATTTCGTGAGATTTGTCGCATGGAGTTGTCTGTGTTTCATGAATTTTGTAAGATTGTCCGAGAACAAGGAATGCTACGTGATACATTAGATATCAAGATCGAGGAGCAATTGGCAATGTTTTTGTTTACAGTGGGCCATAATGCCGGAAATCGTCTAGTTCAGAAGCGTTTTCAACATTCAGGAGAGACAATTAGCCGTCATTTCAATAACGTGTTGAACGCTATAATGGAACTCTCCTCTCAATTCCTTCAACCTCCATCATCTACCACACCTCGTGAACTCCTTGAACAACAACAATACAATCCTTTTTTCAAGGATTGTGTTGGAGCGATTGGCAGTACACACATTTCGGCTAGTAAGGGATTTATTTCACAGCATGTTATGGCTGCATGTTCATTTGATCAACGTTTCCAATTCATCGTCGCGGGTTTGGATAGTTCTGCTATAGAGTCAACCATATTACAAGATGCGATGAATAATAAGGGATTTCACATACCCGAAGGTAAATACTATCTTGTCGATGCGGGATATGCAAATATGCCAGGATTCCTTGCTCCTTACCAAGGCGTATGTAATGACGTAAAAGAATTTTGGGTTGGTGAAAGTGCACTACAGAATCCCAAGGAGTTGTTCAATTATCGGCATTCATCAGCACGAAATGTAATCGAGCGCATTTTTGGTCTTCTAAAAGCACGTTTCCCAATATTAAAGATGATGCATTCTTATCCCTATGAGACCCAAATAAAGGTGGTCATAGCTCTTTGTATTTTACACAACTATATTCGGAGTGAGTCTGGGAGTGACATTTGGCTCTCTGAAGAGTGCGAGTCTGAGATGCAGAGTCAGTATCCACAATCAGGATTTGAGTTAGATCTACACAGCCCAGAAGGTGCATCTATTAGCATACATCAAAATGCTGCATGTGTACTTCGAGATGCTATTGCGAATGATATGTGGGAAGATCGAGTGAACAACCCAGCAACCTATGATTGA 1152 40.89 MDESEFEQHNMEMAATAAAAYYFLRYLNKKPRRSPAVHSATYMDEILRGHPNQFREICRMELSVFHEFCKIVREQGMLRDTLDIKIEEQLAMFLFTVGHNAGNRLVQKRFQHSGETISRHFNNVLNAIMELSSQFLQPPSSTTPRELLEQQQYNPFFKDCVGAIGSTHISASKGFISQHVMAACSFDQRFQFIVAGLDSSAIESTILQDAMNNKGFHIPEGKYYLVDAGYANMPGFLAPYQGVCNDVKEFWVGESALQNPKELFNYRHSSARNVIERIFGLLKARFPILKMMHSYPYETQIKVVIALCILHNYIRSESGSDIWLSEECESEMQSQYPQSGFELDLHSPEGASISIHQNAACVLRDAIANDMWEDRVNNPATYD 383
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00017 383 PANTHER UNCHARACTERIZED 35 325 - -
Eupl1g00017 383 Pfam DDE superfamily endonuclease 174 312 IPR027806 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00017 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197781 Eupl Eupl1g00017 Eupl-Chr1:798237 Eupl4g02242 Eupl-Chr4:53128385
2210412 Eupl Eupl1g00017 Eupl-Chr1:798237 Eupl5g00398 Eupl-Chr5:16002891