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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00026 ATGGGGTTGTACTCGAGTTTGATGGAGGCGATTGAGGCCTACACAGGCTTATCTCCCATGGCGTTCTTCACGATCCTGGTTCTGATGGTCGGCATTTACCGACTGGTTTGTGGGATGTTCGTCGTCCCTGAAGATTTTAAGGCCTTACAGTCCAGTTATCTTCATCAAACAATGGGTTCCTCGGCGTCCTCCTCGTTGCCTGTTGCTGATCCCGTTCAGTTGGGAGACGTTACTGAGGAAGAACTCAGAGCTTATAACGGTTCAGATCCCAAGAAACCTTTGTTGATGGCCATCAAAGGTCAGATCTACGATGTTTCCAGGTCCAGGATGTTTTATGGTCCTGGTGGGCCCTATGCCTTGTTTGCTGGGAGGGATGCGAGCCGAGCCTTAGCTCTAATGTCCTTCGACCCGAATGACCTTACAGGAAATACAGATGGTCTGGAACCATCTGAGCTTGAAGTTTTACAGGACTGGGAGTATAAATTCATGGAGAAATATGTAAAGGTCGGGCAGCTTGTTACAAGGGCTGAGGACAGTGGGGGTCAAGAGAAAATAGAGGAGAAGAGTCAAGTGGGAGATATCATCAGCCAAGATTTGAACGGCAAAGCTGCGGGAACTGAAGCAGGAACCATATGA 636 48.74 MGLYSSLMEAIEAYTGLSPMAFFTILVLMVGIYRLVCGMFVVPEDFKALQSSYLHQTMGSSASSSLPVADPVQLGDVTEEELRAYNGSDPKKPLLMAIKGQIYDVSRSRMFYGPGGPYALFAGRDASRALALMSFDPNDLTGNTDGLEPSELEVLQDWEYKFMEKYVKVGQLVTRAEDSGGQEKIEEKSQVGDIISQDLNGKAAGTEAGTI 211
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00026 211 SMART Cyt-b5-2 77 173 IPR001199 -
Eupl1g00026 211 Gene3D - 75 174 IPR036400 -
Eupl1g00026 211 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 5 186 IPR050577 GO:0005783(PANTHER)|GO:0012505(PANTHER)|GO:0016020(PANTHER)
Eupl1g00026 211 FunFam Membrane steroid-binding protein 1 75 173 - -
Eupl1g00026 211 Pfam Cytochrome b5-like Heme-Steroid binding domain 78 172 IPR001199 -
Eupl1g00026 211 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 72 173 IPR036400 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00026 K17278 membrane-associated progesterone receptor component
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2195107 Eupl Eupl12g00601 Eupl-Chr12:20090792 Eupl1g00026 Eupl-Chr1:983372
2197786 Eupl Eupl1g00026 Eupl-Chr1:983372 Eupl9g01193 Eupl-Chr9:23607004
2210413 Eupl Eupl1g00026 Eupl-Chr1:983372 Eupl14g00504 Eupl-Chr14:6214485
2214122 Eupl Eupl1g00026 Eupl-Chr1:983372 Eupl14g00536 Eupl-Chr14:6633747